Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37050 458 / 2e-146 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 409 / 1e-127 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 401 / 2e-125 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 401 / 2e-125 Leucine-rich repeat protein kinase family protein (.1.2) AT3G21340 399 / 1e-124 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 398 / 3e-124 Leucine-rich repeat protein kinase family protein (.1) AT3G46350 388 / 2e-120 Leucine-rich repeat protein kinase family protein (.1) AT1G51850 387 / 4e-120 Leucine-rich repeat protein kinase family protein (.1) AT1G51890 387 / 5e-120 Leucine-rich repeat protein kinase family protein (.1.2) AT1G51860 381 / 1e-117 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004275 [exp] 1502 / 0 AT2G37050 374 / 3e-115 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 449 / 4e-143 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 428 / 7e-135 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 427 / 2e-134 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 418 / 6e-131 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10037051 [exp] 423 / 4e-130 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025849 [exp] 376 / 7e-116 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10025926 [exp] 374 / 1e-114 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 349 / 5e-106 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004700 [exp] 1095 / 0 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 453 / 2e-144 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 440 / 1e-139 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 440 / 1e-139 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 436 / 5e-138 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G242700 [exp] 388 / 5e-120 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094700 [exp] 360 / 6e-110 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 342 / 5e-103 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 336 / 9e-101 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 298 / 8e-91 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10019237 pacid=23141318 polypeptide=Lus10019237 locus=Lus10019237.g ID=Lus10019237.BGIv1.0 annot-version=v1.0 ATGATGGGGATTGGAGGAAGCCATAGCTGGAGGTTGAGGAGTGTTGACTCTTTGATTCTTTGCCTGCTAATCCTATTTTTTCCATCAGCTCCTGCACAAC AAGAAGGTTTCATAAGCATAAATTGCTGCGGCGAACAAAGGCAGATAGATAGCTCCTCAATAGCTTGGATATCAGATGAGCAATGGTACCCAGACAAAAC AGGCTGCCTAGCCGCCACGTCAGAGAGCTACACAGGCAATGATAAAGTTAGGTTTTTCGACATCGAAAACTCGGAGAAGAGATGCTACACCTTGGCAACG ACTCAAGACAGTGACTACCTGCTAAGGGGTACGTTCCCTTCCGGTAGATCCGCAGGATCCCTGGGGCCCACTACCTTTGATGTCTTGGTTGGTGTCACGC CGATAAGTTTGGTGGACTCGTCGGGCAAATCAACGGTGGAAGCCATGTTCAGAGCAGCTGAGCAGCACGTAGATTTCTGTTTGGTGCATGAAACAGGAGA TCCGTACATTTCGCAGCTTGAACTGAGGCCTCTGCGCGATTCGAGGTACCTTGATGGAAGAGAAAGAGACTCTACTGTTCTGAAGTTGGTGGACAGAGTG GACCTCGGGAACATGGGGATTCCAATCAGGTTCCCTGATGATCCACAGGACAGAATTTGGTCGAGTCCTGACCCGGGAAGAGTAAATTTGTCCACGATGA CCACAATCAACAATACGATCACCAATCCTGCTTCAAAAGTGCCTCAAAGAGTTCTTGAAACTGCAACAACAAATGAAACTCGTCTGCAGTTCTTATACGC TGATCTCGAGATAAGGGATTCCAACTATACCATTTTCCTCTACTTTTTTGAGCTAGATGACAGTGTGAGAGCTGGCCAAAGAGTGTTTGACATCTACATC AACAATGAAGAGCAGCAAACGAGTTTTGACATACGGAAAAATGGATCAAACTACAGCGAAGTTGCTCTCAATTTCACTGCGAATGGGTATCTAAACTTGA CCTTAAGCAGGGTCAACGACAAATCCAAGTATGGACCAATCCTAAATGCATATGAGATTGTGCAGGTTTATCAATGGATCCAAGGAACTAACCAAAGAGA TGTGAGAGTGATAGAAAAGGTGAAAGATGGGCTGATGCAGCAAAACAATGGAAACAAGAAGCTTAAAAGCTGGTCAGGAGATCCATGTCAGCCTTCTTCA TGGGACGGTATTGCTTGCCGTTACAGTAATGGATCCACTGTCATCACTAAGCTGGATATTTCATCAAGTCGACTTCAAGGGCCGATTCCAACCACGACTC CACAGCTAATCTACCTGAAGGAGTTAAATCTCAGCAACAATCACTTCTCTGGCAACATCCCAGAATTCCCAAGGTCCTCAATGTTGATGTCAGTGGATCT ACGCCACAATGCCCTTTCCAGAAATCTTCCGGATTCTTTGGCAAAACTGCCACAATTGAAAGAATTATTCTATGGATGTAATGCTCATCTCAGCTCCACG TATAATCTTTCAAGACTCACTACAGACTCCGGGAGATGCATCAAGCCAGGATCTAGAATGAAAAAAAACCTTGTTCGAATAGTTGGTGTATGTGGATCTT TTCTAATAGCAGTAGCAGTTGTAGCAGCTTGTGTTTGGTTGTACGGAAGAAAATTTGGAGCTCGGAGGAAGATTAACACGAAGAAACTCCCAACGTCTAA GGGGGCAGTTTTCTCAATAGCCACGACAGAAATAGCCACGACCGACGAGGATCCCCTTAGGACGATAAATATTCAAATGTTCACTCTAAATTACATTGCC CATGCAACACAAAAGTACAAGACTCTGATAGGTGAAGGAGGGTTTGGGGCCGTTTACCGTGGCACACTACCTGATGCTACAGAAGTAGCAGTGAAGGTTC GATCCTCTACCTCAACGCAGGGCACCAAGGAATTCGAGAATGAGCTAAATCTCCTTTCAGCAATCCAGCATGAAAACCTAGTCCGTTTACTTGGTTACTG TAGCGAAAATGACCAGCAAATCTTGGTTTATCCATTTATGTCAAATGGCTCTCTACAAGATCGGCTTTACGGAGAAGCAGCAAAAAGAAAAACTCTGGAC TGGCCAACTAGACTCTCTATTGCTCTTGGAGCTGCCCGAGGTTTGACATACCTGCACACTTTTGCTGAGCGTTGTGTAATACATAGAGATGTGAAGTCCA GTAACATACTTCTAGATCACAGCATGAATGCCAAGGTAGCAGACTTCGGATTCTCGAAGTATGCTCCACAAGAAGGAGATAGTGGTGTCTCTCTTGAAGT CAGGGGCACAGCTGGATACTTGGACCCTGAGTATTACTCAACTCAACATCTAACAGCAAAGAGTGATGTCTTTAGCTTTGGAGTGGTTTTACTTGAAATT ATAAGTGGCCGGGAGCCACTGAATATACAAAGACCTCGGAATGAATGGAGCTTGGTTGAATGGGCTAAACCTTTTATAAGGGAATCAAGGATCGATGAAA TTGTGGATCCAGGGGTAAAAGGGCTGTACCATGCAGAGGCAATGTGGAGAGTAGTGGAGGTGGCGTTAGCATGCATCGAAACCTCCTCAGCTTACCGTCC ATGCATGGCTGATATCGTGAGAGAGTTGGAGGATGCACTGATTATAGAGAACAATGCATCAGAATATATGAAGTCCATAGACAGCGCAGGAACTTACAGC TTGGGAGGGTCAAACCGCTTCTCTATAACAATGGATAAGAAGCCTTCTATTCTCCCAGCACCTCCTCCTACACCGCCCGAACCTTCACCAGACAACGTAC AAGCAATGGCTCCAGTGGCACCAAGATAG
AA sequence Show only first row Show all	>Lus10019237 pacid=23141318 polypeptide=Lus10019237 locus=Lus10019237.g ID=Lus10019237.BGIv1.0 annot-version=v1.0 MMGIGGSHSWRLRSVDSLILCLLILFFPSAPAQQEGFISINCCGEQRQIDSSSIAWISDEQWYPDKTGCLAATSESYTGNDKVRFFDIENSEKRCYTLAT TQDSDYLLRGTFPSGRSAGSLGPTTFDVLVGVTPISLVDSSGKSTVEAMFRAAEQHVDFCLVHETGDPYISQLELRPLRDSRYLDGRERDSTVLKLVDRV DLGNMGIPIRFPDDPQDRIWSSPDPGRVNLSTMTTINNTITNPASKVPQRVLETATTNETRLQFLYADLEIRDSNYTIFLYFFELDDSVRAGQRVFDIYI NNEEQQTSFDIRKNGSNYSEVALNFTANGYLNLTLSRVNDKSKYGPILNAYEIVQVYQWIQGTNQRDVRVIEKVKDGLMQQNNGNKKLKSWSGDPCQPSS WDGIACRYSNGSTVITKLDISSSRLQGPIPTTTPQLIYLKELNLSNNHFSGNIPEFPRSSMLMSVDLRHNALSRNLPDSLAKLPQLKELFYGCNAHLSST YNLSRLTTDSGRCIKPGSRMKKNLVRIVGVCGSFLIAVAVVAACVWLYGRKFGARRKINTKKLPTSKGAVFSIATTEIATTDEDPLRTINIQMFTLNYIA HATQKYKTLIGEGGFGAVYRGTLPDATEVAVKVRSSTSTQGTKEFENELNLLSAIQHENLVRLLGYCSENDQQILVYPFMSNGSLQDRLYGEAAKRKTLD WPTRLSIALGAARGLTYLHTFAERCVIHRDVKSSNILLDHSMNAKVADFGFSKYAPQEGDSGVSLEVRGTAGYLDPEYYSTQHLTAKSDVFSFGVVLLEI ISGREPLNIQRPRNEWSLVEWAKPFIRESRIDEIVDPGVKGLYHAEAMWRVVEVALACIETSSAYRPCMADIVRELEDALIIENNASEYMKSIDSAGTYS LGGSNRFSITMDKKPSILPAPPPTPPEPSPDNVQAMAPVAPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	1.0	0.9848
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	1.7	0.9784
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	2.4	0.9743
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	2.4	0.9803
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	3.7	0.9736
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	3.9	0.9747
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	4.2	0.9711
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	4.7	0.9704
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	5.3	0.9771
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	5.9	0.9577

Compare expression of checked genes

Lus10019237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.