Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55100 248 / 3e-72 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G13580 246 / 5e-71 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT2G37360 242 / 2e-69 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55090 241 / 3e-69 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55110 240 / 4e-69 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT2G39350 236 / 1e-67 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55130 234 / 6e-67 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G53510 226 / 8e-64 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT1G31770 172 / 2e-45 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G52310 171 / 1e-44 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004274 [exp] 1253 / 0 AT2G37360 296 / 2e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 444 / 8e-147 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 318 / 7e-97 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10018624 [exp] 315 / 7e-96 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 278 / 3e-83 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 231 / 2e-65 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 226 / 2e-63 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 169 / 7e-46 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10030306 [exp] 166 / 2e-45 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004800 [exp] 932 / 0 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 307 / 4e-93 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.015G036100 [exp] 304 / 7e-92 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 239 / 2e-68 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 239 / 2e-68 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 238 / 3e-68 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 234 / 7e-67 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 234 / 9e-67 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.004G236500 [exp] 175 / 3e-46 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 173 / 1e-45 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10019238 pacid=23141316 polypeptide=Lus10019238 locus=Lus10019238.g ID=Lus10019238.BGIv1.0 annot-version=v1.0 ATGGCTGACGAAACCGTGATCAACATCAAGCCATCCGCGTCGAATTTCACAGGCGGGCTCGAGTTCACCGACCTGACGTACTCGGTGACCACCAAGAAGA AAGCTGACGATGGGAAATGGGTGAGCAGAGAGGTTGACCTGTTGAATAAGATCACTGGGTACGCACCGAAGGGCTGCGTTACTGCGGTTATGGGTCCGAG TGGGGCCGGGAAATCAACGCTGCTCGATGGCTTGGCTGGCAGGATTGCTAGTGGGAGCTTGAAGGGGAGAGTGTCGCTTGATGGCAGAGTTATGAGCCCT GGTTTGATCAAGAGGACTTCTGCGTACGTTATGCAGGACGATCGGCTATTTCCGATGTTGACGGTTTACGAGACGTTGATGTTCGCTGCTGATTTCCGGC TGGGTGCGATCCCGGTCTACGAGAAGAGGGATCGCGTCGAGAAGCTCATCGAACAGCTTGGCCTCTCTTCTACCAGGAACACTTACATCGGAGACGAAGG AACGAGAGGAGTATCGGGAGGCGAACGGAGACGAGTTTCGATCGGAGTAGACATAATCCACGGTCCATCTCTCCTCTTCCTCGACGAACCAACCTCAGGG CTCGATTCCACAAGCGCACACAGTGTGATCGACAAGGTTCGAGGCATTGCGGAATCAGGAAGCACAGTGATCCTGACAATCCACCAGCCTTCTTCAAGAA TCCTACTCCTGCTCGACCATCTCATCATCTTAGCCAGAGGGCAGCTCATGTACCAAGGCTCTCCGAGAGACGTGGCTCTCCATTTGGGGAGGATGGGGAA GAAAGTCCCGAAAGGCGAGAATTCGATCGAGTTCTTGATCGACATCATCCAGGAGTATGATCAGTCTGATATCGGAGTTCAGCCTCTTGCTGAGTTTGCT AGGATCGGAGTGAAACCGCCGCCTTTGGTGGAAGAGGACGGTCCGATTTACAGCGTGGCTCCGTCTCCTCTGATGCCGCCGAGGATTAGCGGTAAAGGTG ATAAACATGGCGGAATTCATGGGAAACGGCATCTTCATCTTGGTGATAATGATGACTTTGATCGGAGTATCAGAAGTCCTTCGTGGAGTGGGACTCCTAG TAGAATCATGGCGAATCTTAAGTTCAATCCTTCTCGTCAGAGCAAAGAGACCAAAACTCATAATCCAATCAGTTCTTCACCCGGCTACATCTACTCCAGC GAGATCTTACCAAGCACACCAACCCCTCACAGCAGCGACTACACAGTCAACGAGAACGACTACTTAACACCAAATGCAGCAATAATTTCACGCCAGAACC CAACCGGCGGCCATGGATCGGCAAAATTCGCCAACTCCTTCTTCCACGAAACCTGGATCTTAATCCGCCGCAACTTCAAGAACATCCGCCGCACGCCGGA GCTCTTCCTCTCCCGCCTGATGGTCCTCACCGTGATGGGATTCATGATGGCCACAATGTTCATGAACCCCAAAGCCGACCTCCAAGGGATAACCAACCGG CTCAGCTTCATGATCTTCACCGTCTGCCTCTTCTTCTTCTCCTCAAACGACGCCGTCCCGGCCTTCATCCAGGAGCGGTTCATCTTCGTCAGGGAGACTT CTCACAACGCGTACAGAGCATCCTCCTACACGATCGCCGGAGTAATCACTTCCCTGCCGTTCCTCCTCCTCCAATCGGGAGTCTACGCTGCAATCGTCTG GAAAGCCCTGAAGCTCCGCGGCCCTTTCCACTACTTCCTCCTCGTCCTCTACGTCTCTCTCCTCTCGACGAACTCCTTCGTCGTGTTCGTCAGCTCTGTC GTCCCGAATTACATTCTCGGATACGCTTCCGTGATCGCCTTCACGGCGCTGTTCTTCCTCTTCTGTGGATACTTTTTAAACAGCGCTGAGATCCCGTCGT ACTGGAAGTGGATGAACAAGATCTCGACGATCACGTACCCGTACGAGGGGTTGTTGATGAACCAGTACCAGACGGATGAGGTGTTTGGGACGACGAAGGA AGGGCCGATCACCGGATTTGGGATTCTCGATTCGTTGAACATTAGTGGGGAGGAATCGGAGAAGTGGAAGAGGATTGCTGTGATGCTTGGATGGGCTGCG TTCTACAGGGTGTTGTTTTACATTGTTCTTCGATTCTTCTCCAAGAACCAGAGATCGTAG
AA sequence Show only first row Show all	>Lus10019238 pacid=23141316 polypeptide=Lus10019238 locus=Lus10019238.g ID=Lus10019238.BGIv1.0 annot-version=v1.0 MADETVINIKPSASNFTGGLEFTDLTYSVTTKKKADDGKWVSREVDLLNKITGYAPKGCVTAVMGPSGAGKSTLLDGLAGRIASGSLKGRVSLDGRVMSP GLIKRTSAYVMQDDRLFPMLTVYETLMFAADFRLGAIPVYEKRDRVEKLIEQLGLSSTRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSG LDSTSAHSVIDKVRGIAESGSTVILTIHQPSSRILLLLDHLIILARGQLMYQGSPRDVALHLGRMGKKVPKGENSIEFLIDIIQEYDQSDIGVQPLAEFA RIGVKPPPLVEEDGPIYSVAPSPLMPPRISGKGDKHGGIHGKRHLHLGDNDDFDRSIRSPSWSGTPSRIMANLKFNPSRQSKETKTHNPISSSPGYIYSS EILPSTPTPHSSDYTVNENDYLTPNAAIISRQNPTGGHGSAKFANSFFHETWILIRRNFKNIRRTPELFLSRLMVLTVMGFMMATMFMNPKADLQGITNR LSFMIFTVCLFFFSSNDAVPAFIQERFIFVRETSHNAYRASSYTIAGVITSLPFLLLQSGVYAAIVWKALKLRGPFHYFLLVLYVSLLSTNSFVVFVSSV VPNYILGYASVIAFTALFFLFCGYFLNSAEIPSYWKWMNKISTITYPYEGLLMNQYQTDEVFGTTKEGPITGFGILDSLNISGEESEKWKRIAVMLGWAA FYRVLFYIVLRFFSKNQRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10019238 [exp]	0	1
					Lus10034961 [exp]	8.2	0.7332
AT4G04980			unknown protein		Lus10033704 [exp]	11.2	0.6549
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	12.5	0.6804
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	12.7	0.7064
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10037110 [exp]	13.1	0.6405
					Lus10009357 [exp]	14.3	0.7007
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	15.7	0.6930
					Lus10025483 [exp]	18.9	0.6947
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10017880 [exp]	35.2	0.5313
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10021007 [exp]	42.0	0.5929

Compare expression of checked genes

Lus10019238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.