Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22660 732 / 0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) AT4G37900 713 / 0 Protein of unknown function (duplicated DUF1399) (.1) AT5G58420 475 / 1e-162 Ribosomal protein S4 (RPS4A) family protein (.1) AT2G17360 475 / 2e-162 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2) AT5G07090 475 / 2e-162 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2) AT1G56230 130 / 6e-31 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) AT4G37682 51 / 6e-08 Protein of unknown function (DUF1399) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004273 [exp] 1160 / 0 AT2G22660 679 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Lus10004272 [exp] 510 / 5e-176 AT5G58420 499 / 0.0 Ribosomal protein S4 (RPS4A) family protein (.1) Lus10020675 [exp] 128 / 6e-30 AT1G56230 747 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Lus10029871 [exp] 125 / 5e-29 AT1G56230 771 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042800 [exp] 863 / 0 AT4G37900 795 / 0.0 Protein of unknown function (duplicated DUF1399) (.1) Potri.002G108900 [exp] 669 / 0 AT2G22660 696 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Potri.006G103700 [exp] 475 / 2e-162 AT5G58420 465 / 3e-168 Ribosomal protein S4 (RPS4A) family protein (.1) Potri.016G124100 [exp] 474 / 4e-162 AT5G58420 458 / 2e-165 Ribosomal protein S4 (RPS4A) family protein (.1) Potri.015G033700 [exp] 473 / 1e-161 AT5G07090 468 / 3e-169 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2) Potri.015G079600 [exp] 469 / 5e-160 AT5G07090 460 / 4e-166 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2) Potri.013G011000 [exp] 468 / 1e-159 AT2G17360 452 / 6e-163 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2) Potri.013G013000 [exp] 141 / 2e-34 AT1G56230 777 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07173 [flax] [poplar] GRDP-like Glycine-rich domain-containing protein-like PF08071 [flax] [poplar] RS4NT RS4NT (NUC023) domain CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif CL0021 [flax] [poplar] OB PF00900 [flax] [poplar] Ribosomal_S4e Ribosomal family S4e
Representative CDS sequence Show only first row Show all	>Lus10019239 pacid=23141382 polypeptide=Lus10019239 locus=Lus10019239.g ID=Lus10019239.BGIv1.0 annot-version=v1.0 ATGGAAGCGAAACAAGAGGTGGAATGGCTAAAGGCGCAGAGGATTTCCACCGGCGTTGACCTTGTGGCTGCGGCGAAACAGCAACTGATTTTCCTTGCGG CTGTTGATAGGAATCGATGGACGTATGAAGAACCAGCTCTTGGGAAGGCAATATACAGGTATAATGCTTGCTGGCTTCCTTTGCTTGCCAAACATTCTGA ATCCGCAACCTTTGAAGGGCCGCTTGTTGTTCCATTGGATTGTGAATGGATTTGGCATTGCCACAGGCTCAATCCTGTGCGATACAACTCGGACTGTTTG GAACTATTTGGATCGGTATTGGACAACTCCCGTGTTGTATCTTCTGTTCAAAGGACCTGCACAAGGAAAACTGAAGAGGTTTGGAACAATTTGTACCCAG ATGAGCCTTTCTGCTTAGACATGACGAGGGCAAATGAAAAATCAGTCACTGTTGAGAAATGTTCGAAATATGATCTGGTTTCTGCAGTTAAGCGACAGGT TCCTTTCACCTATCAGGTGTCCAGGCCTCACATGAGCCATCATGTTTTCCTTGAAGAAGCTGTTGCCAGATACAAAGGATTTCTTCATTTAATCAAGAGA AACCAGGAAAGGTCCATAAATGCCTTTTGCGTCCCAACTTATGACATTGATCTTATCTGGCACACACATCAGCTGCATCCTGTTTCCTACTCTAAAGATC TGGTTGCACTGCTGGGTAAGATATTGGAGCATGATGATACGGATTCAGACAGAACAAAAGGAAAGAAATTGGACGTTGGATTTTTCGCAACTACGAAACA ATGGGAAGAGACATTTGGCTCGAGATATTGGAAAGCAGGTGCAATGTACAGAGGTGCTGCCCCATCTCCTGTTACTTTCAGTCCTTCTGCATTGACTCTG TCGAGCAAAGAGTCGAAGCAGCTTAAAAATCATCACGACATAATTCAACTCCCCCAGCAGAAGATTGTAGAGGTTATGTTGGAGATAGTTGGGGTGAAAA ATTTGCCTGAAGGTCATAAAGGAAGCCTCCATGTCATGTTCAGTAAAAACCAGCCAGATCAGTTTTTTAATGTCAAGAGAAAACTTACAATACTGTCGGA ATCCGGTCAGAAACAGGTTGTGTCTTTCCAATGTGAAGCGGAGGGAGATCTGTTGCTTGAACTAGTTTCACACTCACCTTCCAAATTACCAATAGCCAAT GAATTTAAGACACTGGGTACAACTTTACTTTCTCTGCAAAATCTTCTGAGCCCAATTTCCAGACACGCAGAAGAGACATGGCTAGAACTGCTGCCTGTTT CCGGGGAAATGAGCTCATTCCCTATTTGTCTGCGAGTTGCTATCTCCCTCACTGTCCCTGCTCAAGCTCCATATGTATTGGATTTGACTCATCCGAGGTC ACTGTCTAAAGGATCGTGTTTCTTCCCACTACCTGGGAGGGTTCAGCATGCTAAGCGCTTGATGGATATCACCAGTGAAACTATTAGTGAAACAATGAGC TTGCAGATGAGGGACAATAAGAAGACTAAGGAAAATGATAAAAGTGCTCCCATCAAGCAAGTAATCTTGCTCAAAGAATCCGGTGAAGTTCAGACTGTTG CGGAATTTTCAGATTCTCAATGGTCTTTGATGGATTCTCAATGGAGCCTTCGACTTAAAAGCAAGTCCAATAAAGACGGTCTTCTAGCCGAGATGATAGG CTGCAGGATGGTGAGGATTTTCCAAGGCAGAAAGCTGGATTTTGAATCCAAACTCTGTGAGAAGCGGAGCAGTGAACAGTATTTCATGACTGCTGTGGAA TTTTCCGCTGAACATCCGTATGGCAATGCTGTGGCATTGATGGATTTGAAGTCAGGGATCATTAAGGTGAATGAAGCATGGCTGGTGTTGCCTGGGATTG TATCAGCCTTTATACTCTCCAACATACTAGACACCAAAGAATACGAAAGCTTCACTCTAAACCCGAAACTGTCAAACGAGACGGATGAGGCGAGGGGTTT GAAGAAGCACATGAAGAGGCTCAATGCTCCCAAGCATTGGATGCTCGACAAGCTAGGCGGCGCTTTCGCTCCTAAGCCTTCATCTGGGCCGCACAAGTCT AGGGAGTGCCTTCCTTTGGTTCTTATTCTGCGAAACAGGTTGAAGTATGCTTTGACATACCGCGAGGTTCAGTCCATCTTGATGCAGCGTCATGTGATGG TTGATAACAAGGTCAGGACTGATAAGACCTTCCCAGCTGGGTTTATGGATGTGGTCTCCATCCCCAAGACCAATGAGAACTTCCGTCTGCTGTATGACAC TAAGGGAAGGTTCAGACTGCACTCCATCCGTGATGAGGAGGCAAAGTTCAAACTGTGCAAGGTCAGGAATATCCAATTCGGTTCCAAGGGTATCCCATAC CTCAACACCTACGATGGCCGCACCATTCGCTACCCTGACCCGCTCATCAAGGCCAACGACACCATCAAGCTGGACCTTGACACAACCAAGATTGTCGACT TCATCAAGTTTGACGTCGGCAATGTCGTCATGGTTACCGGAGGCAGGAACAGAGGCCGAGTCGGAATCCTGAAGAACAGGGAGAAGCATAAGGGAAGCAT TGAGACAGTCCACATCCAGGACTCTACTGGTCATGAGTTCGCCACACTTCTGTCCAATGTGTTCACCATTGGCAAGGGGTCCAAGCCGTGGGTGTCTCTC CCCAAGGGCAAGGGTATCAAGCTTACCATCATTGAAGAGGCTAAGAAGAGGATTGCTGCTCAGGCTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10019239 pacid=23141382 polypeptide=Lus10019239 locus=Lus10019239.g ID=Lus10019239.BGIv1.0 annot-version=v1.0 MEAKQEVEWLKAQRISTGVDLVAAAKQQLIFLAAVDRNRWTYEEPALGKAIYRYNACWLPLLAKHSESATFEGPLVVPLDCEWIWHCHRLNPVRYNSDCL ELFGSVLDNSRVVSSVQRTCTRKTEEVWNNLYPDEPFCLDMTRANEKSVTVEKCSKYDLVSAVKRQVPFTYQVSRPHMSHHVFLEEAVARYKGFLHLIKR NQERSINAFCVPTYDIDLIWHTHQLHPVSYSKDLVALLGKILEHDDTDSDRTKGKKLDVGFFATTKQWEETFGSRYWKAGAMYRGAAPSPVTFSPSALTL SSKESKQLKNHHDIIQLPQQKIVEVMLEIVGVKNLPEGHKGSLHVMFSKNQPDQFFNVKRKLTILSESGQKQVVSFQCEAEGDLLLELVSHSPSKLPIAN EFKTLGTTLLSLQNLLSPISRHAEETWLELLPVSGEMSSFPICLRVAISLTVPAQAPYVLDLTHPRSLSKGSCFFPLPGRVQHAKRLMDITSETISETMS LQMRDNKKTKENDKSAPIKQVILLKESGEVQTVAEFSDSQWSLMDSQWSLRLKSKSNKDGLLAEMIGCRMVRIFQGRKLDFESKLCEKRSSEQYFMTAVE FSAEHPYGNAVALMDLKSGIIKVNEAWLVLPGIVSAFILSNILDTKEYESFTLNPKLSNETDEARGLKKHMKRLNAPKHWMLDKLGGAFAPKPSSGPHKS RECLPLVLILRNRLKYALTYREVQSILMQRHVMVDNKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRNIQFGSKGIPY LNTYDGRTIRYPDPLIKANDTIKLDLDTTKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSIETVHIQDSTGHEFATLLSNVFTIGKGSKPWVSL PKGKGIKLTIIEEAKKRIAAQAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22660			Protein of unknown function (d...		Lus10019239 [exp]	0	1
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Lus10003377 [exp]	5.1	0.9266
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	8.2	0.9333
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	9.2	0.9216
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	19.4	0.9162
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	20.0	0.9150
AT5G12970			Calcium-dependent lipid-bindin...		Lus10031244 [exp]	20.8	0.8992
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10043412 [exp]	21.5	0.9113
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	21.7	0.9093
AT5G43960			Nuclear transport factor 2 (NT...		Lus10024953 [exp]	25.9	0.9078
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	26.8	0.9089

Compare expression of checked genes

Lus10019239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.