Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10560 406 / 2e-133 Glycosyl hydrolase family protein (.1) AT1G02640 271 / 5e-82 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT1G78060 270 / 8e-82 Glycosyl hydrolase family protein (.1) AT5G64570 270 / 1e-81 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 270 / 2e-81 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G09700 263 / 3e-81 Glycosyl hydrolase family protein (.1) AT5G49360 269 / 4e-81 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT3G19620 256 / 2e-76 Glycosyl hydrolase family protein (.1) AT5G65660 119 / 1e-31 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004271 [exp] 630 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 302 / 5e-96 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10022374 [exp] 305 / 9e-95 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 294 / 2e-90 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010015 [exp] 285 / 5e-87 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10016858 [exp] 280 / 3e-86 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10020966 [exp] 271 / 7e-82 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10002158 [exp] 138 / 1e-38 AT5G65660 146 / 3e-46 hydroxyproline-rich glycoprotein family protein (.1) Lus10039633 [exp] 130 / 7e-36 AT5G65660 147 / 1e-46 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089100 [exp] 448 / 1e-149 AT5G10560 988 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168400 [exp] 320 / 5e-100 AT1G78060 981 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 304 / 2e-94 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 299 / 1e-92 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G197200 [exp] 295 / 5e-91 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.002G094000 [exp] 295 / 6e-91 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.010G141400 [exp] 291 / 9e-90 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.014G122200 [exp] 290 / 5e-89 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.008G108100 [exp] 276 / 5e-84 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.001G206800 [exp] 276 / 7e-84 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019240 pacid=23141322 polypeptide=Lus10019240 locus=Lus10019240.g ID=Lus10019240.BGIv1.0 annot-version=v1.0 ATGGACAGCCCGGATTTCCCGCCGCCGATTCCCCACCACGTGGACGCATCCCGACCGTCGCTCGGTTTCCCTCTCGGCACAGCTCTGCTACTCATCGTCA TCTTCGGCTTGAGCGGCATCTTCTCCTGCTGCTACCACTGGGAAAAGCTCCGCTCTCTCCGTCGCCGCCGCCGTGGTGTCTCCGACGAGGTGGAGGATAT CGAATCTCCGCCGTCCAAACCTACCCCGACCCACTTGGATGTGAAGGAGAGTGGGAGAGGAAGCGTGGCGGTGGTGATGGCCGGAGATGAGGTTCCGAAG TTCATAGCATTGCCTTGTCCATGTCAGCCGGAGAAGGCGGAGAGTGCTGCTGAGGTGGAAGTGAAGGAGAAGGAGGAGAAGCCACCTAAGCCACCGGCGG CCGGGATTCCGGAACCATTTCTAATCGAGACTGCAATCCAATCAGCAAGTTTGTTATGGATACGGGGGATAAATGACACCTGGACATTGGGGTCGAGACT GAGCATTGAGGAAGCGGTCGCGATTACTCTCAAAGCCGGTATTGATATCAACTGTCGATCGGCTGTTGCGCTGCACGCTGAATCTGCTATAGCTCAGGGG TATTCATGCGAGCCTCAGAGCCTCTATGAGGGCCTTAAAGGCTATGCAAAGAAGACGATTTTCGCAGCTGGTTGTGCCGATGTCCCTTGCGTATCTGATG CTCAATTCGATGAGGCGGTACGAGTAGCCAAGAAGGCGGATTTTGTAATCGTGGTTGCTGGACTCGATTTATCTCAAGAAACTGAAGATCATGACAGAGT TAGTCTTCTGCTACCAGGCAAACAAATGTCCCTTGTTCTAACTGTTGCTACAGCTAGTAAGAACCCTATAATTTTGGTCCTCACCGGTGGAGGACCGATC GATGTGTCGTTCGCGAAAGCCAACCCGAGAATCTCCAGCATTTTTTGGATTGGATACCCTGCTGAAGCCGGTCCGAAAGCACTAGCAGAAGTCGTATTTG GCCAATATAATCCAGGTGGAAGACTTCCAATGAATTGGTACCCTGAATCATTCACCGAGGTGCCAATGAACATCATGAACATGCGAGCAGATCCTTCGCG AGGCTATCCAGGCCGAACCTATCGGTTCTACACCGGAGATCAAGTATACAGCTTCGCTCACGGCTTGAGCTACACCAACTACACATACAGTCTCTTGTCA GCACCAAACAAGCTGACCTTGTTAGGATCCTCGACGACTCGAAAGAGAATCCTAACCAGCTCAAAACCGACCGGATACATACTCGTGGACGACATACTAA CATCGTGCAATTCGCTCAGGTTCTATGTTGTGGCCTCCATGACAAATGCCGGTCAGGTTGATGGAAGCCATGTAGTCTTGCTGTTTGCTAGAGTCCCCCA AGCGATGAGGGGGACTCCATTGAAGCAACTCGTGGGGTTCCACCGAGTGCATCCTGTTTCCGGTGGTTCAACTGAAACGAGCATCTTGGTCGACCCTTGC AAACACTTGAGTGTAGCTGACGAAGGTGGGAGAAGGGTAATGGCTCTGGGGAAGCATGTATTGATGCTGGGAGGCTTGGAACATACGGTTGCAGTTGCTT GA
AA sequence Show only first row Show all	>Lus10019240 pacid=23141322 polypeptide=Lus10019240 locus=Lus10019240.g ID=Lus10019240.BGIv1.0 annot-version=v1.0 MDSPDFPPPIPHHVDASRPSLGFPLGTALLLIVIFGLSGIFSCCYHWEKLRSLRRRRRGVSDEVEDIESPPSKPTPTHLDVKESGRGSVAVVMAGDEVPK FIALPCPCQPEKAESAAEVEVKEKEEKPPKPPAAGIPEPFLIETAIQSASLLWIRGINDTWTLGSRLSIEEAVAITLKAGIDINCRSAVALHAESAIAQG YSCEPQSLYEGLKGYAKKTIFAAGCADVPCVSDAQFDEAVRVAKKADFVIVVAGLDLSQETEDHDRVSLLLPGKQMSLVLTVATASKNPIILVLTGGGPI DVSFAKANPRISSIFWIGYPAEAGPKALAEVVFGQYNPGGRLPMNWYPESFTEVPMNIMNMRADPSRGYPGRTYRFYTGDQVYSFAHGLSYTNYTYSLLS APNKLTLLGSSTTRKRILTSSKPTGYILVDDILTSCNSLRFYVVASMTNAGQVDGSHVVLLFARVPQAMRGTPLKQLVGFHRVHPVSGGSTETSILVDPC KHLSVADEGGRRVMALGKHVLMLGGLEHTVAVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10560			Glycosyl hydrolase family prot...		Lus10019240 [exp]	0	1
AT3G18150			RNI-like superfamily protein (...		Lus10014141 [exp]	8.5	0.6700
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	13.4	0.6565
AT2G31230	AP2_ERF	ATERF15	ethylene-responsive element bi...		Lus10022935 [exp]	13.5	0.6323
					Lus10009372 [exp]	16.4	0.6565
AT3G05950			RmlC-like cupins superfamily p...		Lus10030047 [exp]	18.0	0.5911
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	19.0	0.6565
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	21.2	0.6565
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	23.2	0.6565
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	25.1	0.6565
					Lus10032535 [exp]	26.2	0.6348

Compare expression of checked genes

Lus10019240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.