Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65670 345 / 1e-118 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT2G22670 343 / 3e-118 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT4G29080 258 / 5e-85 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT3G04730 211 / 8e-68 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT3G23050 211 / 2e-67 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT4G14550 209 / 6e-67 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT1G04250 204 / 8e-65 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 164 / 9e-50 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 157 / 4e-47 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G15540 145 / 2e-42 AUX_IAA MSG2, IAA19 MASSUGU 2, indole-3-acetic acid inducible 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011583 [exp] 562 / 0 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 305 / 1e-102 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10028222 [exp] 293 / 7e-99 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 244 / 1e-79 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10012984 [exp] 232 / 1e-74 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10015907 [exp] 219 / 2e-70 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10039414 [exp] 208 / 3e-66 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10039413 [exp] 177 / 7e-55 AT1G04240 250 / 2e-85 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) Lus10039488 [exp] 167 / 4e-51 AT5G43700 247 / 3e-84 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108000 [exp] 335 / 2e-114 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.003G051300 [exp] 263 / 3e-86 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 261 / 1e-85 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.006G161400 [exp] 249 / 2e-81 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.013G041400 [exp] 239 / 2e-78 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 232 / 7e-76 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 228 / 2e-74 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G053900 [exp] 223 / 3e-72 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 221 / 2e-71 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 210 / 9e-67 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10019241 pacid=23141344 polypeptide=Lus10019241 locus=Lus10019241.g ID=Lus10019241.BGIv1.0 annot-version=v1.0 ATGACTCCACCACCCTTGCTGAGTGTGGAGGAAGGCAGGAGCAATGTCTCGAATCTAGTAGCTTCTTCTTCATCTTCCATTGGTTGCTTCTCCGACAACA AATCGTGTTTAAAAGAACGCAACTACTTAGGATTGTCGGATTGTTCGTCTGTAGACAGTTCTGCAGCTCCTGAGGATAACAACAAGAACAAGAATAGCCT CAAGTTTAATGCCACCGAGTTAAGGCTCGGCCTTCCTGGTTCTCTATCCCCGGAAAGAGAGTTGTTTCCTTTGGTTCCTTCAAGGAACGGAAACAAAAGA GTGTTCTTCGACACCTTGGACCAGTTCTCGGAGGTCAAAGGTTCTGTCTTTCCAGAGAAGAATTGGCTATTTCATGCTTCCGAGACTGAGTTCGAGTCCC CACAGTCTATTGCAAAGGGAAAATCGTCTCAGGAGCGACCTGCTCCTCCAAATGTAAAGGCACAGGTTGTTGGTTGGCCTCCGGTGAAGTCATTCAGGAA GAACACACTTGCTACGAGTTCAAGGAACAACAATAACGACGAAGTCGATGGGAAGCCAGGACTGAGTCCTTTATTTATCAAGGTAAGCATGGATGGTGCT CCCTATTTGAGGAAAGTGGACCTGAGGAATTACTCGGCCTATCAAGAGTTGTCTGCTGCTCTCGAGAAGATGTTCAGTGGTTTTACGATAGGGAAATGTG GATCGCATGGAACTCCAGGCAAGGAAAAGCTAAGTGAAAGTAAGTTAAGGGATCTTCTTCACGGGTCGGAGTATGTGCTTACGTATGAGGATAAAGATGG AGACTGGATGCTTGTTGGCGATGTACCGTGGGAGATGTTCATCGAGACATGCAAGAGGCTCAAGATTATGAAGGGCTCTGATGCTATTGGTCTAGCTCCC AGAGGAATGGAGAAATCCAGGATTGCAGCCTAG
AA sequence Show only first row Show all	>Lus10019241 pacid=23141344 polypeptide=Lus10019241 locus=Lus10019241.g ID=Lus10019241.BGIv1.0 annot-version=v1.0 MTPPPLLSVEEGRSNVSNLVASSSSSIGCFSDNKSCLKERNYLGLSDCSSVDSSAAPEDNNKNKNSLKFNATELRLGLPGSLSPERELFPLVPSRNGNKR VFFDTLDQFSEVKGSVFPEKNWLFHASETEFESPQSIAKGKSSQERPAPPNVKAQVVGWPPVKSFRKNTLATSSRNNNNDEVDGKPGLSPLFIKVSMDGA PYLRKVDLRNYSAYQELSAALEKMFSGFTIGKCGSHGTPGKEKLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLKIMKGSDAIGLAP RGMEKSRIAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10019241 [exp]	0	1
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	7.3	0.8174
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	10.6	0.7755
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10004080 [exp]	11.6	0.7233
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	12.2	0.7724
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10024522 [exp]	13.7	0.7750
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10013284 [exp]	14.1	0.7476
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	18.7	0.7340
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	19.8	0.7608
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	21.4	0.7736
AT3G24150			unknown protein		Lus10019404 [exp]	22.1	0.7640

Compare expression of checked genes

Lus10019241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.