Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37870 1066 / 0 PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 (.1) AT5G65690 1058 / 0 PCK2, PEPCK phosphoenolpyruvate carboxykinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011582 [exp] 1120 / 0 AT4G37870 1051 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10042933 [exp] 621 / 0 AT4G37870 655 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10028227 [exp] 540 / 0 AT4G37870 614 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10042934 [exp] 372 / 5e-126 AT4G37870 409 / 8e-141 phosphoenolpyruvate carboxykinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011200 [exp] 1126 / 0 AT4G37870 1058 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Potri.002G107700 [exp] 1073 / 0 AT4G37870 1039 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0374 [flax] [poplar] PEP-carboxyk PF01293 [flax] [poplar] PEPCK_ATP Phosphoenolpyruvate carboxykinase
Representative CDS sequence Show only first row Show all	>Lus10019242 pacid=23141426 polypeptide=Lus10019242 locus=Lus10019242.g ID=Lus10019242.BGIv1.0 annot-version=v1.0 ATGACGAAGATAACGACGGCAAGCAGTAGCAGCAGTGGGAAGCAGAAGGGATCAAGTGACGGAGGGATCTGTCACGACATGGCGGCGCCGACGGTGAAGG CGCAGACGATCGACGAGCTCCACTCGCTTCAGCGGAAGAGGTCGGCTCCCAGCACTCCGATCAAAGGCGTTCAGGGATCGTTCGCCGCCGTCTCCGAGGA GGATCGCGAGAAGCAGCAGCTCAAGTCCATCAGCGCGTCGCTCGCGTCGCTAACCAGAGAGACTGGGCCCAAAGTGGTGAGAGGGGACCCAGCAACGAAG AAAGACGCCGCCGTCGGAAAAGTCCACCACCACCACCACGTCGACGCTCCGGCTATCAGCGCCAGCGACAGCTCACTGAAGTTCACTCACGTGCTCTACA ACCTGTCTCCCGCGGAGCTGTATGAGCAGGCGATCAAGTACGAGAAAGGGTCGTACGTCACGTCGACCGGTGCCTTGGCCACCCTCTCCGGCGCCAAGAC CGGCCGCGCTCCCAGGGACAAGCGCGTCGTTAAGGATGACGTCACCGAGGGCGAGCTCTGGTGGGGAAAGGGATCGCCGAATATAGAGATGGATGAGCAT ACTTTCTTGGTTAACAGAGAAAGAGCTGTTGATTACTTGAATTCTCTGGATAAGGTGTTTGTGAACGATCAATTCTTGAATTGGGACCCCGAGAACAGAA TCAAGGTTCGAATTGTCTCAGCCAGAGCATACCATTCTTTGTTCATGTACAACATGTGCATCCGACCCACACCGGAAGAACTGGAGCAATTCGGCTCGCC GGACTTCACGATCTACAACGCCGGACAGTTCCCCTGCAACCGTTACACGCACTACATGACGTCTTCCACCAGCGTGGATTTGAACTTAGCCAGGAGAGAA ATGGTGATCCTCGGCACGCAGTACGCCGGTGAGATGAAGAAGGGTTTGTTCAGTGTTATGCATTACCTCATGCCCAAGCGTTCCATCCTGTCCTTGCACT CTGGCTGCAACATGGGGAAGCAAGGAGACGTCGCCCTCTTCTTTGGCCTCTCAGGTACTGGGAAGACAACATTGTCTACTGATCCCAACAGGTACCTGAT CGGAGACGATGAGCATTGCTGGACCAACAGCGGTGTCTCGAACATTGAAGGCGGGTGTTACGCCAAGTGCATCGATCTTTCCAAGGAGAAAGAGCCCGAA ATCTGGAATGCCATCAAGTTCGGAACTGTGCTGGAGAATGTCGTCTTCGACGAGCATACCCGGGAGGTAGATTATGTTGACAGATCAGTAACAGAGAACA CCAGAGCTTCGTACCCAATCGAGTACATTCCGAATGCGAAAATTCCTTGCGTTGGTCCTCACCCGAAGAACGTGATCCTCCTGGCCTGCGACGCCTTTGG CGTGCTTCCACCGGTGAGCAAGTTGAGCATGGCGCAGACCATGTACCATTTCATCAGCGGCTACACTGCCCTGGTTGCTGGAACAGAGGATGGCGTAAAG GAGCCACGAGCAACGTTTTCGGCTTGTTTCGGTGCAGCATTCATAATGCTGCATCCGACCAAGTACGCAGCCATGTTGGCAGAGAGAATGCAGAAGCATG GCGCTACTGGATGGCTCGTTAACACCGGTTGGTCAGCAGGAAGCTACGGTTCAGGAAGCAGGATCAAGCTGGCTTACACGAGGAAGATCATCGACGCGAT ACACTCAGGGAGCCTGTTGAAATCAGAGTACAGGAAAACTGAAATGTTCGGGCTCGAAATCCCCACTCATGTCGATGGGGTGCCCTCAGATATCCTGGAA CCTATGAACACTTGGACAGATAAAAAGGCGTACAAGGAGACGCTAATGAAGCTGGCTGGTCTGTTCAAGAGCAACTTCGAGACATTCACGGATTACAAGA TTGGGAAAGACAACAATCTCACTGAGGAGATCTTGGCCGCCGGTCCAAATTTCTGA
AA sequence Show only first row Show all	>Lus10019242 pacid=23141426 polypeptide=Lus10019242 locus=Lus10019242.g ID=Lus10019242.BGIv1.0 annot-version=v1.0 MTKITTASSSSSGKQKGSSDGGICHDMAAPTVKAQTIDELHSLQRKRSAPSTPIKGVQGSFAAVSEEDREKQQLKSISASLASLTRETGPKVVRGDPATK KDAAVGKVHHHHHVDAPAISASDSSLKFTHVLYNLSPAELYEQAIKYEKGSYVTSTGALATLSGAKTGRAPRDKRVVKDDVTEGELWWGKGSPNIEMDEH TFLVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMYNMCIRPTPEELEQFGSPDFTIYNAGQFPCNRYTHYMTSSTSVDLNLARRE MVILGTQYAGEMKKGLFSVMHYLMPKRSILSLHSGCNMGKQGDVALFFGLSGTGKTTLSTDPNRYLIGDDEHCWTNSGVSNIEGGCYAKCIDLSKEKEPE IWNAIKFGTVLENVVFDEHTREVDYVDRSVTENTRASYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLSMAQTMYHFISGYTALVAGTEDGVK EPRATFSACFGAAFIMLHPTKYAAMLAERMQKHGATGWLVNTGWSAGSYGSGSRIKLAYTRKIIDAIHSGSLLKSEYRKTEMFGLEIPTHVDGVPSDILE PMNTWTDKKAYKETLMKLAGLFKSNFETFTDYKIGKDNNLTEEILAAGPNF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	1.7	0.9679
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	4.0	0.9750
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	4.0	0.9602
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	5.4	0.9322
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	5.6	0.9303
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10032048 [exp]	6.2	0.9190
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	6.5	0.9697
					Lus10021816 [exp]	7.0	0.8975
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	9.4	0.9673
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	10.5	0.9673

Compare expression of checked genes

Lus10019242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.