Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22720 99 / 1e-21 SPT2 chromatin protein (.1.2.3) AT4G37860 57 / 1e-08 SPT2 chromatin protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011581 [exp] 665 / 0 AT2G22720 139 / 3e-35 SPT2 chromatin protein (.1.2.3) Lus10021143 [exp] 57 / 3e-09 AT4G37860 66 / 7e-13 SPT2 chromatin protein (.1) Lus10007985 [exp] 41 / 0.0001 AT4G37860 56 / 1e-10 SPT2 chromatin protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009700 [exp] 202 / 2e-59 AT2G22720 166 / 2e-45 SPT2 chromatin protein (.1.2.3) Potri.005G148700 [exp] 194 / 2e-56 AT2G22720 177 / 1e-49 SPT2 chromatin protein (.1.2.3) Potri.001G257300 [exp] 68 / 4e-12 AT4G37860 108 / 1e-26 SPT2 chromatin protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08243 [flax] [poplar] SPT2 SPT2 chromatin protein
Representative CDS sequence Show only first row Show all	>Lus10019243 pacid=23141332 polypeptide=Lus10019243 locus=Lus10019243.g ID=Lus10019243.BGIv1.0 annot-version=v1.0 ATGCCGCAGTATTATGATGATGAAGTTGAAGAATATGATGACTATGAGGATGAAGGAGAAGAGGAGGAATACGAGGAAGTAGAAGAACGGAAGCCTACCG CTGAGGAACTAGAATATCTTAATTATAGAGAGCGGATGAAGGAACGTATTAGAAGGAAGATGCTGAAGGAGAACGGTTCATCTGCTGGCAGGTCTCTATA CAATAGGAAGAAACTTCCTCTTGAAAGTTTTGGTTCATTCTTTGGCCCCTCTCAGCCAGTCATTGCACAGAGAGTCATCCAGGAGAGTAAATCACTATTG GAAAATCCACACCTCTCAAGGAGAGTTGAGAACCCGCAGCGTACTGAGAAACGGAGTTCGTCAACTGCATCAGCTCCAAAAAACGGAGTAACTGAGAGAG TGTCGACTGTGAAAAAGGAGTTACAAACAAAAGTACAGACACTCAAGAATACAAGGGACTACTCGTTCCTCTTATCGGATGATGCAGATGTCCCAGCTCC TGCTAAAGTGCCTCCGGCGCGGAGAGTGTCTGTTCCACAGTCTGAGGCACGACCTGCTCAAGTGCAACAGAAGAGCAAACAGCCTATGGCCACTGGTTAC AACAGGCATGTTAATGGTGGTGCTCCAGAGCAGAGGAAATCAAATTCCATGAATGGTCAACCTCCCCTAAGGACAATGGCACCCCACAAGGGTCCTTCAA GTTCCGGTACTAAACCGAGTATAGACTCCAGGAGGCAGCCTGGTAGCAGCAATGGTGTTGGACCTGGACGGCCAGCAGTGCCGAAAGGTTTACCTCCAAA ACCAGCTCTTGGTCACCACAGTGACAGGAGGGCACCTCTAGCCGCTCCAAAGACCCAAAGGCCTCTCCCCTCAAAGATGCCATCAAGTTCTCAGCGGCCA CAGTTGGAACAGAGGAAAATGATGCAAGAACCTAGTAGATATTTGGAGCAGAGAAAATTAGTATATGAACCCAATAGACAGTCGGACCACAGGAGAATAG TACAAGATCCAAGTAGAAGTAGACCGATGGCAAAGCAACCAATTCCACCTCCGAGACCTCAGATAAATAAGCCTGTTCGACCACCAAGCTCATCCTACCC ATTGAATAAGCCTGGTGTTCGACCAGGCTCATCGTACTCATCAGTACAAGAGAGTCGTACTATGAAAAAGCCCATATCGCGGAATGCTGATGATGGCTAC AATGATCGTTACAGTAGGCCGCCTGTCCGGAGACCGGAGTCCCGTCCAGCTCCTCGTGATGACCGACCTAAGAAAAGGCCATCGAGACCATTCCCTGAGG ATGATGATGATGAGGGCGCACAGGCTCTCAGTATAATCAGAAACATGTTCAATGTGAAGAGATATGCTGGGCGTGATGATGATGACAGCGACATGGAAGC GAACTTTGATGATATCTTGGAGGAAGAAAGACGAAGTGCGTTGATTGCGAGGAAGGAAGACGAGGAGCAACTGCGGCTGATAGAGGAAGAGGAACGACAA GAACGAATGAGAAAGAAGCGTAAGCTGAACCGTTAG
AA sequence Show only first row Show all	>Lus10019243 pacid=23141332 polypeptide=Lus10019243 locus=Lus10019243.g ID=Lus10019243.BGIv1.0 annot-version=v1.0 MPQYYDDEVEEYDDYEDEGEEEEYEEVEERKPTAEELEYLNYRERMKERIRRKMLKENGSSAGRSLYNRKKLPLESFGSFFGPSQPVIAQRVIQESKSLL ENPHLSRRVENPQRTEKRSSSTASAPKNGVTERVSTVKKELQTKVQTLKNTRDYSFLLSDDADVPAPAKVPPARRVSVPQSEARPAQVQQKSKQPMATGY NRHVNGGAPEQRKSNSMNGQPPLRTMAPHKGPSSSGTKPSIDSRRQPGSSNGVGPGRPAVPKGLPPKPALGHHSDRRAPLAAPKTQRPLPSKMPSSSQRP QLEQRKMMQEPSRYLEQRKLVYEPNRQSDHRRIVQDPSRSRPMAKQPIPPPRPQINKPVRPPSSSYPLNKPGVRPGSSYSSVQESRTMKKPISRNADDGY NDRYSRPPVRRPESRPAPRDDRPKKRPSRPFPEDDDDEGAQALSIIRNMFNVKRYAGRDDDDSDMEANFDDILEEERRSALIARKEDEEQLRLIEEEERQ ERMRKKRKLNR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	0	1
AT3G28430			unknown protein		Lus10018448 [exp]	1.4	0.8234
AT1G15780			unknown protein		Lus10025452 [exp]	2.8	0.7625
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	5.2	0.7550
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	6.5	0.6732
AT1G50120			unknown protein		Lus10013430 [exp]	6.9	0.7495
AT1G15780			unknown protein		Lus10025450 [exp]	8.4	0.7189
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	9.5	0.6745
AT1G20670			DNA-binding bromodomain-contai...		Lus10013220 [exp]	13.3	0.7039
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10028714 [exp]	13.6	0.6371
AT1G15780			unknown protein		Lus10015323 [exp]	17.8	0.7088

Compare expression of checked genes

Lus10019243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.