Plant FIBer expression Database

Lus10019244 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64500 584 / 0 Major facilitator superfamily protein (.1)
AT2G22730 566 / 0 Major facilitator superfamily protein (.1)
AT5G65687 516 / 2e-180 Major facilitator superfamily protein (.1)
AT2G29650 43 / 0.0003 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011580
[exp]
860 / 0 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1)
Lus10003528
[exp]
444 / 6e-152 AT2G22730 495 / 8e-173 Major facilitator superfamily protein (.1)
Lus10002935
[exp]
276 / 7e-87 AT5G64500 340 / 7e-112 Major facilitator superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G081100
[exp]
627 / 0 AT5G64500 617 / 0.0 Major facilitator superfamily protein (.1)
Potri.001G286600
[exp]
598 / 0 AT5G64500 548 / 0.0 Major facilitator superfamily protein (.1)
Potri.001G249800
[exp]
42 / 0.0008 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Lus10019244 pacid=23141311 polypeptide=Lus10019244 locus=Lus10019244.g ID=Lus10019244.BGIv1.0 annot-version=v1.0
ATGGCCGGCGACGAAGACATCGTCGATTCATCTCCTGACGCAGCTCCGTCGTGGTTCACTCCCAAGAGGTTACTTGTGATCTTCTGTATGATTAACATGC
TCAATTACTTGGACCGGGGAGCGATCGCCAGCAACGGCGTCAACGGAAGTCTCGAGAGTTGTGATGACTCGGGGATTTGCAGTTCCGCCACCGGAATTCA
GGGGGATTTTAAGCTGAACAACTTCCAGGATGGAGTTCTTTCGTCGGCATTCATGGTTGGGCTTCTTCTGGCGTCTCCTATTTTTGCTTCCCTGGCTAAG
AGTGTCAATCCTTTTAGGCTTATCGGGGTTGGATTGTCTGTTTGGACATTGGCAACGGCTGGGTGTGGATTCTCCTTTGATTTTTGGTCGATTGCAATAT
GTCGAATGTTTGTTGGTGTTGGTGAGGCTTCTTTTATAAGTCTGGCAGCTCCGTTCATAGATGACAATGCTCCTGTTTCAGAGAAAACGGCTTGGCTTGC
AATGTTCTACATGTGCATACCAACTGGAATTGCTTTGGGTTACGTCTACGGTGGAGTTGTTGGAACTTATATGAGTTGGCGCTTTGCATTCTGGCTTGAG
TCACTTTTGATGCTTCCATTTTCTGTTTTTGGATTTCTCATGAAGCCTTTGCCGCTAAAAGGTTTTGGTCCTGCTGAGTGCAAAACCCGTGCAACTCTTT
CTCTGGCTGAAAGTGCTTCTTCCAGAGTTGAAGTGAGTGGAGTTTTTAGTCCTAAGTGTCAAACAATTTTACTGGAAATTATACTAAGTCAAAGGTGTAA
TTGCGTTGCTTTTATGTATGGCAGGAAAAACCGCAAGTCCTATATGATGATCCAGTTGTCGCATCTTTCGAAGGACTTGAAAGTGCTTTTGCTGGAGAAA
GTGTATGTTGTAAATGTTTTAGGTTACGTAGCATACAATGCGGTGATTGGAGCATACTCCTATTGGGGACCAAAAGCTGGCTATAATATTTATAATATGA
ACAATGCAGACCTTGTGTTTGGAGGAATTACTGTCGTCTGTGGAATTTTTGGAACGTTAGCCGGAGGATTCGTACTTGACCATATGACTGCTACAATCCC
AAATGCTTTTAAGCTTCTTTCTGGAGCAACATTTCTGGGTGCAGTCTTTTGCTTCGCTGCATTCTGTATGAAAAGCTTGTCTGGTTTCATACCTGTGTTT
GTAGTCGGAGAGCTACTGATTTTTGCAACTCAGGCTCCAGTAAATTATGTGTGTCTCCATTGTATCGAACCTAGTCTAAGACCGATATCAATGGCTGTAT
CAACTGTCTCGATCCATATCCTCGGCGATGTGCCTTCCTCCCCGCTCGTCGGTGTCCTCCAGGACTCCATCAACAACTGGAGAGTAACCGCGCTTATTCT
AACTGCTGTTCTGTTTCCTGCCGCTGCAATTTGGTCTATAGGTGTGTTCCTGAAAAGTGTGGACAAGTTCGAGACAAATGAAGCCTCGACAGGTTCCAAC
TCGGCCACGGCGCCCTTGCTCGAAGAAGAATTGAGGAATGACATCCCAAACAACTTGTGA
AA sequence
>Lus10019244 pacid=23141311 polypeptide=Lus10019244 locus=Lus10019244.g ID=Lus10019244.BGIv1.0 annot-version=v1.0
MAGDEDIVDSSPDAAPSWFTPKRLLVIFCMINMLNYLDRGAIASNGVNGSLESCDDSGICSSATGIQGDFKLNNFQDGVLSSAFMVGLLLASPIFASLAK
SVNPFRLIGVGLSVWTLATAGCGFSFDFWSIAICRMFVGVGEASFISLAAPFIDDNAPVSEKTAWLAMFYMCIPTGIALGYVYGGVVGTYMSWRFAFWLE
SLLMLPFSVFGFLMKPLPLKGFGPAECKTRATLSLAESASSRVEVSGVFSPKCQTILLEIILSQRCNCVAFMYGRKNRKSYMMIQLSHLSKDLKVLLLEK
VYVVNVLGYVAYNAVIGAYSYWGPKAGYNIYNMNNADLVFGGITVVCGIFGTLAGGFVLDHMTATIPNAFKLLSGATFLGAVFCFAAFCMKSLSGFIPVF
VVGELLIFATQAPVNYVCLHCIEPSLRPISMAVSTVSIHILGDVPSSPLVGVLQDSINNWRVTALILTAVLFPAAAIWSIGVFLKSVDKFETNEASTGSN
SATAPLLEEELRNDIPNNL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G22730 Major facilitator superfamily ... Lus10019244
[exp]
0 1
AT5G20410 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALAC... Lus10008048
[exp]
1.7 0.8373
AT1G30360 ERD4 early-responsive to dehydratio... Lus10022924
[exp]
2.6 0.8611
AT4G17100 unknown protein Lus10040133
[exp]
3.5 0.8419
AT5G45030 Trypsin family protein (.1.2) Lus10038347
[exp]
9.5 0.8132
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Lus10022500
[exp]
12.4 0.7819
AT4G35300 TMT2 tonoplast monosaccharide trans... Lus10030726
[exp]
14.6 0.8258
AT4G33010 ATGLDP1 glycine decarboxylase P-protei... Lus10026429
[exp]
14.7 0.8177
AT1G31420 FEI1 FEI 1, Leucine-rich repeat pro... Lus10033291
[exp]
17.0 0.7869
AT5G47900 Protein of unknown function (D... Lus10014112
[exp]
18.8 0.8115
AT2G27920 SCPL51 serine carboxypeptidase-like 5... Lus10041352
[exp]
20.4 0.7972

Lus10019244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.