Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49650 781 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18550 267 / 2e-79 ATP binding microtubule motor family protein (.1) AT5G47820 229 / 1e-63 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G21380 228 / 3e-63 Kinesin motor family protein (.1) AT1G59540 223 / 2e-62 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G39050 221 / 5e-61 Kinesin motor family protein (.1) AT3G16630 216 / 3e-60 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G21730 217 / 4e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G16060 212 / 2e-59 ATP binding microtubule motor family protein (.1) AT3G51150 216 / 3e-59 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011579 [exp] 1132 / 0 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005181 [exp] 226 / 3e-63 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10041958 [exp] 226 / 5e-63 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 224 / 6e-62 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10000392 [exp] 219 / 4e-60 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024429 [exp] 218 / 1e-59 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018661 [exp] 216 / 1e-59 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 215 / 7e-59 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10010047 [exp] 214 / 8e-59 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058400 [exp] 273 / 1e-80 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G122100 [exp] 230 / 5e-64 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 226 / 7e-63 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.005G150800 [exp] 223 / 2e-61 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 219 / 4e-60 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G046700 [exp] 218 / 5e-60 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G136600 [exp] 216 / 1e-59 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.010G013500 [exp] 213 / 7e-59 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G013300 [exp] 213 / 8e-59 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 214 / 1e-58 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10019245 pacid=23141390 polypeptide=Lus10019245 locus=Lus10019245.g ID=Lus10019245.BGIv1.0 annot-version=v1.0 ATGCCTAGCATCAGAGCTCCCGCGACGAAGAAAGCCACTACTCTGACTGTTGCTGTGAAGTGTAGGCCGTTAGCTAAGAGAGAGCGCGGCCGTGACATTG TTCGTTTCAGCGATAGAAATGAGATTACTGTTCTGGATCCTGACTTGTCCAAGGACTATCTCGATCGAGTACAGCATCGGACCAAGGAGAAGAGCTATTG CTTCGATCATGCATTTGGTCCTCACTCGGCCAACTCGGAGGTTTATGCCACTTGTATATCATCAGTCATCTCTGGAGTTGTTCAAGGTCTAAATGCAACT GTGTTTGCCTATGGTTCAACTGGAAGTGGGAAGACTTATACTATGGTTGGGAACTCGGATGATCCTGGACTCATGGTTCTCAGCCTGAATACCATCTTTG ATCTTATGAAAATGAACAAGGGTCCAGATGAATTTGAAGTCACGTGTTCCTATCTCGAAGTGTACAATGAAGTGATCTATGATCTGCTTGAGAAATCATC AGGGCATCTAGAACTTCGAGAAGACCCAGAACAAGGAATAGTTGTTGCAGGGTTGAGATGCATCAAGGTTCATTCTGCTGATAAGATTCTTGAACTGTTG AATTTGGGGAATAGTAGAAGAAAAACAGAAAGCACAGAAGCTAATGCAACATCCTCAAGGTCACATGCTGTCTTAGAGATTATCGTTAAAAGAAGGCAGA AAAACAAGTTTAGAGATCAAATCTTGAAAGGGAAACTTGCACTTGTTGATCTTGCCGGTAGTGAGCGAGCTTCTGAAACAAATAACGTGGGCCACAAGCT AAGAGATGGTGGGAATATTAACCGTTCCCTCTTAGCTTTGGCAAACTGCATTAACGCCTTGGGGAAGCAACAGAAGAAAGGTCTTGCTTATGTCCCTTAC CGTAACAGCAAACTTACTCGGATTCTTAAAGATGGCCTGAGCGGTAATTCACGGACAGTCATGGTTGCTACTATATCTCCAGCTGACAGTCAGTATCACC ATACCGTCAACACCTTGAAATATGCTGACAGAGCTAAGGAAATAAAGACGCATATTCAGAAAAACATTGGCACAGTGGATAACCACGTATCAGATTATCA AAAGATGATTGACAGTCTTCAGGTTGAGGTGGGCCGGTTGAGAAAAGCACTGGCGGAAAAGGAAACGCAGCTAACAGCCAAACCGACAGGAAAAGTTGAA GACGATGAGCTGTCGTGGTTAGATAGTTTGAGCCGTGAAACCAGTGAAAATGTTCAGGAGCGGATAAACTTACAGAAGGCTTTGTTTGAGCTTGAAGAAA CTAACCATCGTAATCGTGTTGAACTCCAGGAGCTCGATGAGGCGATTGCAAAGCAACAGACTGTCGAAAAAGAAGGAACAGCAGTGGATGCTTTGAGGTC TAGACGACAAATAATTCTCGATAATATCCGCGACAACGAGGAAGCTGGTGTCAACTACCAAAAGAAACGCCAGGGCCAACACCAAACAACGACACAGGAG CACCTCTGGAACTTGCTTATGGGATTAGGCCTCGACGAAAAACGTATGCTGGACCTTGCTGCTAACCAAGGAATAACCATCGAAGACTGGACGTCCCAAA TTGAGCTTCCGGAAAAGAAAGAGTTACCTAAGTTGACGCACACTCCTTCCCCTGGAGGACAATTACCATTCAGACCTTGCACCTTACCTCCTCTGCATTG TCGTAACCCAGACGCAATGCCATCTCCGCGAGTGATATGCAGTCTTTGGAGAAACAACCATCCTTCGTATTACCTGCAACCACCACCCCCTGCAGCTTAC CTCAGGCAAGCTTGTAGCAGTCTGTCCTACCCCGAATTGAGAACTTGGCCTTCACCTTGTGACGGAAGATGCTCCTCGACGACACCTTGCACCGTTTACA TCAGCCAACAACATAAGCTATACGAAGGCGGTCCACCGCACATTGCCATGGCCGGTACTCCTCCCGACTTGCCTTCGTATTGGAATGGTCCGAGACTGAT TGGAATGCCGCGATTCGGATCAGGAAGTCCACAGTATCCCGGCCCTTGA
AA sequence Show only first row Show all	>Lus10019245 pacid=23141390 polypeptide=Lus10019245 locus=Lus10019245.g ID=Lus10019245.BGIv1.0 annot-version=v1.0 MPSIRAPATKKATTLTVAVKCRPLAKRERGRDIVRFSDRNEITVLDPDLSKDYLDRVQHRTKEKSYCFDHAFGPHSANSEVYATCISSVISGVVQGLNAT VFAYGSTGSGKTYTMVGNSDDPGLMVLSLNTIFDLMKMNKGPDEFEVTCSYLEVYNEVIYDLLEKSSGHLELREDPEQGIVVAGLRCIKVHSADKILELL NLGNSRRKTESTEANATSSRSHAVLEIIVKRRQKNKFRDQILKGKLALVDLAGSERASETNNVGHKLRDGGNINRSLLALANCINALGKQQKKGLAYVPY RNSKLTRILKDGLSGNSRTVMVATISPADSQYHHTVNTLKYADRAKEIKTHIQKNIGTVDNHVSDYQKMIDSLQVEVGRLRKALAEKETQLTAKPTGKVE DDELSWLDSLSRETSENVQERINLQKALFELEETNHRNRVELQELDEAIAKQQTVEKEGTAVDALRSRRQIILDNIRDNEEAGVNYQKKRQGQHQTTTQE HLWNLLMGLGLDEKRMLDLAANQGITIEDWTSQIELPEKKELPKLTHTPSPGGQLPFRPCTLPPLHCRNPDAMPSPRVICSLWRNNHPSYYLQPPPPAAY LRQACSSLSYPELRTWPSPCDGRCSSTTPCTVYISQQHKLYEGGPPHIAMAGTPPDLPSYWNGPRLIGMPRFGSGSPQYPGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49650			P-loop containing nucleoside t...		Lus10019245 [exp]	0	1
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	4.7	0.9586
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	6.9	0.9407
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	7.6	0.9580
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002074 [exp]	8.8	0.9165
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	10.4	0.9564
AT4G33110			S-adenosyl-L-methionine-depend...		Lus10022684 [exp]	11.8	0.9322
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	12.6	0.9551
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10006168 [exp]	13.4	0.9402
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	14.7	0.9499
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	16.6	0.9491

Compare expression of checked genes

Lus10019245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.