Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 210 / 1e-65 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22760 197 / 4e-61 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 185 / 3e-56 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22770 177 / 9e-53 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29930 86 / 3e-19 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT5G57150 84 / 9e-19 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G01260 83 / 2e-17 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G32640 83 / 4e-17 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G12860 81 / 1e-16 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 78 / 1e-15 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011578 [exp] 466 / 1e-166 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006085 [exp] 238 / 1e-77 AT2G22760 72 / 6e-15 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 227 / 2e-71 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020503 [exp] 214 / 3e-68 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 213 / 1e-67 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 208 / 2e-64 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 184 / 1e-54 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009726 [exp] 138 / 5e-40 AT4G37850 63 / 2e-12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 89 / 4e-19 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095250 [exp] 238 / 9e-77 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G287200 [exp] 225 / 2e-71 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 223 / 2e-70 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G009400 [exp] 207 / 5e-64 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 91 / 8e-20 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 88 / 6e-19 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 86 / 5e-18 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 84 / 1e-17 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.010G041500 [exp] 79 / 5e-17 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 80 / 3e-16 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019247 pacid=23141429 polypeptide=Lus10019247 locus=Lus10019247.g ID=Lus10019247.BGIv1.0 annot-version=v1.0 ATGGAGGATCCGTCTTTCAATTACCAGTACCAATCCCCCTTCAACTTCTCAATCGACGACTTCGATTTCGATCACCACTCGTTTACCCCCGCCAACTGTT CGATGAGATTCCCCAACGAAGAAGCTGCTGTTAACAATCCTCCTCTCATCATTTCTCCACAGAGTTTCACCACTACTTCTCAGTCCAGTGATATGAACAA CAACAGTAGACCTGCCAAGATTCCCAAGACGACGAGCGATTCGAGAGCTTCTCCTCCTTCGTCGTCTTCCTCGCCTTACTCGTGCATTATCTCGTTCGAC AGCTCTAGCAGCACCGATTCGGTTCCTGCTGTTCCTCAAAAGCCTCCGAGGTCCTCCTATCCTCCAGCAGCAGTTAAGCCTGAGTATGCCTCGATCGAAA ACGGTCTTCAGTATGGCTGCTCGGTGTTGAATAATGCTGCTAGCCATGGCACTAAAAGACCTGCAGCTGCAATGAGTAGGAGTCCGATTAGTGCACAGGA TCATGTCATGGCTGAGAGGAACCGTCGCGAGAAGCTCAGCGAACGGTTCATCGCTCTCTCGGCTGTTATCCCTGGCCTCAAGAAGACTGACAAGGCATCA GTTCTAGGAGATGCAATCAAGTACCTTAAGCAACTCCAAGAGCGAGCCAAGACGCTCGAGGAACAAGTAAAGAATAAGACGATCGAATCAGTAGTCTATG TGAAGAAGTCTCGTGTATACAACCTCGACGACGACGAATTGTCATCATCAACAGTTGAGAATTCTGATGGCTTTTCATCCAACCAATCCCTGCAGCTTCC GGAGATCGAAGCTAGAGTCTCGGGGAAAGATGTCATGATCAGAATCCACTGCGAGAAACAGAGAGGATGCCTCCCGAAGCTACTCTGTGAGATCGAGAAG CTCCATCTCAATGTCATGAACAGCAACGTCTTGCCGTTCGGAAGCTCCACCCTCGACATAACCGTCATCGCTCAGATGGACCACGATTTCTCCACTACAA CCGTTGATCTTGTGAGGAATCTAAGAAAGGCTCTGACGTAA
AA sequence Show only first row Show all	>Lus10019247 pacid=23141429 polypeptide=Lus10019247 locus=Lus10019247.g ID=Lus10019247.BGIv1.0 annot-version=v1.0 MEDPSFNYQYQSPFNFSIDDFDFDHHSFTPANCSMRFPNEEAAVNNPPLIISPQSFTTTSQSSDMNNNSRPAKIPKTTSDSRASPPSSSSSPYSCIISFD SSSSTDSVPAVPQKPPRSSYPPAAVKPEYASIENGLQYGCSVLNNAASHGTKRPAAAMSRSPISAQDHVMAERNRREKLSERFIALSAVIPGLKKTDKAS VLGDAIKYLKQLQERAKTLEEQVKNKTIESVVYVKKSRVYNLDDDELSSSTVENSDGFSSNQSLQLPEIEARVSGKDVMIRIHCEKQRGCLPKLLCEIEK LHLNVMNSNVLPFGSSTLDITVIAQMDHDFSTTTVDLVRNLRKALT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10019247 [exp]	0	1
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10040664 [exp]	6.2	0.8014
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	6.7	0.8650
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10015547 [exp]	7.3	0.8376
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10037685 [exp]	8.0	0.8695
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10014274 [exp]	10.5	0.8372
					Lus10022087 [exp]	12.8	0.8701
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10028112 [exp]	16.7	0.7883
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	18.6	0.8287
AT4G32295			unknown protein		Lus10001504 [exp]	20.2	0.7889
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	24.8	0.8642

Compare expression of checked genes

Lus10019247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.