Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65700 1415 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 1377 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 999 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 976 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 659 / 0 HSL1 HAESA-like 1 (.1) AT5G61480 654 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 607 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28490 600 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 594 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 587 / 0 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011576 [exp] 1628 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 1551 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 1018 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011585 [exp] 1005 / 0 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 1003 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 941 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 937 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10035783 [exp] 858 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038382 [exp] 660 / 0 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009200 [exp] 1479 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 1087 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 1078 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 1015 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 990 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 985 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 707 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 682 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 664 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 657 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019248 pacid=23141306 polypeptide=Lus10019248 locus=Lus10019248.g ID=Lus10019248.BGIv1.0 annot-version=v1.0 ATGAGACTCCTTTACCCTCTCCTCTTCCTCCTCTTAAACCTCCACATCCCAACTTCCTCCGGCCGGGTATTATCCGAAACCCAAGCCCTCCTCTCCCTAA AATCCGCCGTCACCGACGACCCAAACTCCTTCCTTTCCGCCTGGAACTCCTCCGCCGACCTCTGCTCCTGGCCGGGAGTCACGTGCGACTTCTCCAGCCG TCACGTGACCTCATTAGACCTCTCTAGCCTCTCCCTCACTGGAACCCTCTCCCCGGACATCTCCCACCTCCTCTACCTCCAGAACCTCTCCCTAGACGTC AACAAATTCTCCGGCCCCATCCCGCCGCAGCTCTCCGCCGTCACCAACCTCCGCTACCTCAATCTCTCCAACAATGGGTTTAATGATACTTTCTCCGCTC AGCTAGCCCAGCTCAAAAACCTCGAGGTACTGGATATCTACAACAACAACATGACCGGCGACTTGCCTCTCGCCGTCGCCGAAATGCCCAACCTCCGCCA CCTGCACCTCGGGGGGAACTTCTTCGGCGGGGAGATCCCGCCGCAGTACGGGCAGTGGGAGTTCATCGAATACCTCGCTCTCTCCGGTAACGAGCTCGTC GGAAGAATCCCGCCGGAGATTGGTAACCTAACCAGCCTCAAACAGCTCTACCTCGGGTACTACAACAGCTACCAAAGCGACTTGCCTGCCGAGATGGGAA ACCTAACCAACTTAATCCGCCTAGACGTCGCGAACTGCAATCTCTCCGGCGAAATCCCGCCGGAAATCGGCAACCTCCAAAACCTCGACACATTGTTCCT CCAAGTCAATTCCCTCAGCGGTCCTCTCACTCCGGAGCTCGGCAATCTGAAGAGCTTGAAATCATTAGATCTCTCCAACAACATCTTCCAAGGAGAAATC CCGCCGTCTTTCTCCGAGCTGAAGAACTTAACTTTACTCAACCTATTCAGAAACGATCTCCACGGAACAATCCCGGAGTTCATCGGCGAGCTCCCGGAGC TCGAAACGTTAAACCTCTGGGAGAATAACTTCACCGGAACCATCCCTCAAGGGTTAGGCCAGAACGGGAAGCTAATCAGACTAGATCTCTCTTCCAACAA GCTCACCGGATTTCTCCCACCAGATCTCTGCTCCGGTAACCGCTTTGAAATCCTAATCACTCTCAGCAACTTCCTCTTCGGCCCGATTCCTGAATCCTTG GCGAAATGCGGGTCGCTGACCCGGATCCGAATGGGGGAGAATTTCTTAAACGGATCCATCCCATCGGGTCTCTTCGGGTTACCGGCGCTTGCTCAAGTCG AACTACAAGACAATCTATTAACCGGAGAGTTTCCGGCCAGCAGAAACAAAGCACTCGGTCAAATCAGTCTTTCCAACAATCAGCTATCCGGTTCGTTACC ATCGACGATAGGAGACTTCTCCGACGTTCAGAAGCTACTCCTCGACGGGAATCAGTTCACCGGTTCGATCCCATCCGAGATCGGGAAGCTTCAGCAGCTC TCCAAGATTGATGTCAGCCACAACAAATTTTCCGGTCGGATTGCGCCCGAGATCAGTAAATGCAAAGTGTTGACTTTCGTTGACCTAAGTCGGAACTCGC TCTCCGGCGAGATTCCAACGGAGGTGTCAGAGATGAGGATGTTAAACTACTTAAACGTGTCGAGAAACTCGCTGTCCGGTGAAATCCCGCCGTCGATTTC GTCTATGCAGAGCTTAACATCTGTAGATTTCTCTTACAACAATCTATCCGGATTGGTACCGGCAACCGGCCAATTCAGCTACTTTAACTCCACTTCGTTC ATGGGGAATCCTGATCTCTGTGGACCTTATTTAAGTGCTTGCAAAAATGGCGTCGCAGGAACTCATAATGCTGGTAAAGGGCTCTCTGGTTCTTTGAAAC TGTTCCTTGTAATTGGTTTGCTGGTATGCTCGATTGCGTTCGCAGTAGCAGCAATCTTAAAGGCGAGATCTTTGAAAAAATCTAGCGATTCTCGAGCTTG GAAGATGACAGCATTCCAGCGTCTCGACTTCACAGTCGACGACGTGCTGGAATGCTTGAAAGAAGAGAACATCATAGGGAAAGGCGGCGCAGGAATCGTC TACAAAGGCTCGATGATCGGTGGCGATCATGTCGCGGTAAAGAGGCTACCTTCGATCACTCGAGGGGGGTCGAATCACGATCATGGATTCAACGCTGAGA TTCAAACACTAGGGAGGATTCGACATAGACACATTGTTAGGCTGTTGGGATTTTGTTCAAATCACGAGACGAATCTTTTGGTATACGAGTATATGCCTAA TGGAAGCCTTGGTGAAGTCCTCCATGGTAAGAAAGGTGGACATCTGCATTGGAACATTCGGTACAAGATTGCTGTGGATTCCGCCAAGGGTCTTTGCTAC CTCCATCATGATTGTTCGCCGTTGATTGTTCATCGAGACGTAAAGTCGAATAACATTCTGTTGGATTCGGGGTTCGAAGCTCATGTTGCCGATTTCGGGC TGGCGAAGTTCTTGCAGGATTCTGGCACTTCTGAGTGCATGTCTGCCATTGCTGGATCTTATGGATACATAGCTCCAGAGTACGCCTACACGATGAAAGT CGACGAGAAGAGCGACGTGTACAGCTTCGGAGTGGTTCTGCTCGAGCTGATCGCAGGGAGGAAACCAGTCGGGGAGTTCGGAGACGGGGTGGACATAGTC CAGTGGGTTCGAAGTATGACGGATTCGAACAGGGAGAGTGTGCTCAAAATATTGGACCCTCGATTGTCGTCGGTGCCTCTCAACGAGGTCATGCACATGT TCTACGTAGCGATGCTGTGCGTCGAGGAGCAGGCTGTGGAGAGGCCGATGATGAGGGAGGTTGTGCAGATGCTATCCGAGCATCCAAAGCCACCACCCGG TTCGAAACAAGCCGTGGAAACCGATTCGTTCGCTATCACGATAGACTCGCCAGGGTCGGGTTCAACTCTAGACTCTCCTGATGCGGCAACAACAAGCAGC AAAGATACCAAAGAGGAGCATCAGAATCATCCACCTGATCTTCTCAGCATTTGA
AA sequence Show only first row Show all	>Lus10019248 pacid=23141306 polypeptide=Lus10019248 locus=Lus10019248.g ID=Lus10019248.BGIv1.0 annot-version=v1.0 MRLLYPLLFLLLNLHIPTSSGRVLSETQALLSLKSAVTDDPNSFLSAWNSSADLCSWPGVTCDFSSRHVTSLDLSSLSLTGTLSPDISHLLYLQNLSLDV NKFSGPIPPQLSAVTNLRYLNLSNNGFNDTFSAQLAQLKNLEVLDIYNNNMTGDLPLAVAEMPNLRHLHLGGNFFGGEIPPQYGQWEFIEYLALSGNELV GRIPPEIGNLTSLKQLYLGYYNSYQSDLPAEMGNLTNLIRLDVANCNLSGEIPPEIGNLQNLDTLFLQVNSLSGPLTPELGNLKSLKSLDLSNNIFQGEI PPSFSELKNLTLLNLFRNDLHGTIPEFIGELPELETLNLWENNFTGTIPQGLGQNGKLIRLDLSSNKLTGFLPPDLCSGNRFEILITLSNFLFGPIPESL AKCGSLTRIRMGENFLNGSIPSGLFGLPALAQVELQDNLLTGEFPASRNKALGQISLSNNQLSGSLPSTIGDFSDVQKLLLDGNQFTGSIPSEIGKLQQL SKIDVSHNKFSGRIAPEISKCKVLTFVDLSRNSLSGEIPTEVSEMRMLNYLNVSRNSLSGEIPPSISSMQSLTSVDFSYNNLSGLVPATGQFSYFNSTSF MGNPDLCGPYLSACKNGVAGTHNAGKGLSGSLKLFLVIGLLVCSIAFAVAAILKARSLKKSSDSRAWKMTAFQRLDFTVDDVLECLKEENIIGKGGAGIV YKGSMIGGDHVAVKRLPSITRGGSNHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWNIRYKIAVDSAKGLCY LHHDCSPLIVHRDVKSNNILLDSGFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTMKVDEKSDVYSFGVVLLELIAGRKPVGEFGDGVDIV QWVRSMTDSNRESVLKILDPRLSSVPLNEVMHMFYVAMLCVEEQAVERPMMREVVQMLSEHPKPPPGSKQAVETDSFAITIDSPGSGSTLDSPDAATTSS KDTKEEHQNHPPDLLSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	0	1
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	3.6	0.9408
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	3.7	0.9152
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	6.9	0.9366
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	8.2	0.8794
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	8.3	0.9361
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	8.9	0.9200
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031241 [exp]	9.2	0.9109
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	11.0	0.9329
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	13.2	0.9293
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030657 [exp]	13.4	0.9093

Compare expression of checked genes

Lus10019248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.