Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22790 128 / 3e-34 unknown protein AT5G67020 126 / 8e-33 unknown protein AT3G50340 105 / 5e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011575 [exp] 380 / 3e-131 AT2G22790 160 / 8e-46 unknown protein Lus10011589 [exp] 246 / 2e-78 AT2G22790 166 / 4e-48 unknown protein Lus10019345 [exp] 91 / 2e-21 AT5G67020 248 / 2e-82 unknown protein Lus10009357 [exp] 79 / 2e-17 ND 167 / 2e-51
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008900 [exp] 207 / 7e-64 AT2G22790 153 / 2e-43 unknown protein Potri.007G044200 [exp] 135 / 2e-36 AT5G67020 537 / 0.0 unknown protein Potri.005G138300 [exp] 127 / 4e-33 AT5G67020 520 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019249 pacid=23141335 polypeptide=Lus10019249 locus=Lus10019249.g ID=Lus10019249.BGIv1.0 annot-version=v1.0 ATGGCGACCGCCACCGCCACCCGCCACCACCATCGCCTCCCGAAACCCAAATCCTCACCCGCCACCAAGCTCCAAGTCTGCTTCTCCTACGCCGCCTACG CCAAGAAGCTAATCCACCGCCTCAGATCCTTCCACATTCAAATCCTCCCCGGTCTCACCACCTCCGAATTCTCCGATATCGAATCGGAATTCGGCTTCTC CTTCCCTCCCGACCTCCGCTACATTCTCCAAGAAGGCGTCCCTTTCGGCCCCGATTTCCCCAACTGGCGATCTTCATCTTTATCTTCATCGGCGCTCCTC AATCTTCCCGCATTCAATCTGTCAAGAAACATCCGCCGCCGCCGCTTCTGGGTCGGGGCCTGGGGCGACCGACCCGGGAATTGGTTCGAATTGAACGCTG TGGTCAAGAAATTGATCGACGAAGCTCCTGCTCTGGTTCCGATTTACACCAATTGCTACATCCCGGCCTCCCCTGTTGCGGCGGGGAATCCGGTGTTCTA CGTGGACGAGGAGAGCGTACGGATCTTGAGCTTCGACATTGCCGGATTCTTTCAGCAGCTGGAGATTAATCCGATTAATTCGACGGCGGGGGTGACGAGG AGGAGGATGAAGATTATTAGTGCTCTGCCGGCTTGGGCGGCGACGGCGGCGAGAGAGATTGAGTTCTGGACGGATGCGGCGGATAATGGAAAGACGATGG CCGCCGACGCAACTGCGGCGTCGTCGTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNCATGGTCGGCGGGAGCGACGTTTGACTTTCAGATTCCGAATGGTTGCAGCGGCGGCGATCGGCATCGGCGGGGGGGGCTTTG GGGGTTCATTGGTCTGCATCCGGTTGAGCTTGAAGTATAACAACCCGACTATCCAGCCGAGAGACAGATCAATAGGTTGA
AA sequence Show only first row Show all	>Lus10019249 pacid=23141335 polypeptide=Lus10019249 locus=Lus10019249.g ID=Lus10019249.BGIv1.0 annot-version=v1.0 MATATATRHHHRLPKPKSSPATKLQVCFSYAAYAKKLIHRLRSFHIQILPGLTTSEFSDIESEFGFSFPPDLRYILQEGVPFGPDFPNWRSSSLSSSALL NLPAFNLSRNIRRRRFWVGAWGDRPGNWFELNAVVKKLIDEAPALVPIYTNCYIPASPVAAGNPVFYVDEESVRILSFDIAGFFQQLEINPINSTAGVTR RRMKIISALPAWAATAAREIEFWTDAADNGKTMAADATAASSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXHGRRERRLTFRFRMVAAAAIGIGGGGFGGSLVCIRLSLKYNNPTIQPRDRSIG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67020			unknown protein		Lus10019249 [exp]	0	1
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	4.4	0.9162
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	6.7	0.8916
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	8.7	0.9127
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	9.2	0.9024
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004783 [exp]	9.4	0.8786
					Lus10024932 [exp]	17.0	0.8688
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	32.5	0.8671
AT3G09925			Pollen Ole e 1 allergen and ex...		Lus10014394 [exp]	33.8	0.8507
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	34.5	0.8973
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	38.6	0.8842

Compare expression of checked genes

Lus10019249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.