Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37830 69 / 7e-16 cytochrome c oxidase-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011574 [exp] 126 / 1e-38 AT4G37830 135 / 1e-42 cytochrome c oxidase-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008800 [exp] 83 / 3e-21 AT4G37830 89 / 4e-24 cytochrome c oxidase-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02046 [flax] [poplar] COX6A Cytochrome c oxidase subunit VIa
Representative CDS sequence Show only first row Show all	>Lus10019250 pacid=23141355 polypeptide=Lus10019250 locus=Lus10019250.g ID=Lus10019250.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCGGCGATTCTGCGATCTGGTGTTCTTCGAAGCGCTCTTCGCGGCGGCTCAAAGGCCTCCGCTCCGGCCAAGCGCCAATTCTCTGCTTCCG CTCATCAGGACGTTGAATTCGAGGCGAAGGAAGCAGCGAAATGGGAGAAGATCACATACCTCGGAGCTGCTACTTGTACGGCTCTAGCTACCTACTGCTT GTCGAAGGGACACCCTCACTCAGAGGAGCCACCGGCATATCCCTATCTTCATATCCGCAACAAGGAGTTCCCATGGGGTAATCTTTCTCTGGCGAGAACT TATGTTTTGAAAAACTTATGCTTTATTATTCGAGACTGTTATAAGAACTACAATGCCTTCCTAGAATCGCCAAAGATTTGTCTCCCCTCGGTGAAATTGC GTACCTTTAGATAA
AA sequence Show only first row Show all	>Lus10019250 pacid=23141355 polypeptide=Lus10019250 locus=Lus10019250.g ID=Lus10019250.BGIv1.0 annot-version=v1.0 MASAAILRSGVLRSALRGGSKASAPAKRQFSASAHQDVEFEAKEAAKWEKITYLGAATCTALATYCLSKGHPHSEEPPAYPYLHIRNKEFPWGNLSLART YVLKNLCFIIRDCYKNYNAFLESPKICLPSVKLRTFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	0	1
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	1.4	0.9523
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	1.4	0.9595
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10007542 [exp]	4.2	0.9450
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	4.2	0.9509
AT2G20420			ATP citrate lyase (ACL) family...		Lus10008238 [exp]	4.5	0.9499
AT3G44150			unknown protein		Lus10029366 [exp]	5.3	0.9429
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	6.0	0.9413
AT1G30890			Integral membrane HRF1 family ...		Lus10025577 [exp]	6.6	0.9387
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	7.5	0.9369
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	7.7	0.9283

Compare expression of checked genes

Lus10019250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.