Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011573 [exp] 101 / 7e-24 ND / Lus10020538 [exp] 90 / 9e-20 AT2G04810 46 / 5e-05 Protein of unknown function (DUF295) (.1) Lus10035601 [exp] 64 / 9e-11 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10003252 [exp] 55 / 4e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019251 pacid=23141300 polypeptide=Lus10019251 locus=Lus10019251.g ID=Lus10019251.BGIv1.0 annot-version=v1.0 ATGGAAGGCCGTTGCGAATCTATCTCCTCAACCTGGTCCATCCTTCTCCCTCCTTTAAAATCGGCCCGGTTGAGATGCAACTATAACGATGCGTTCGTCC AATATTTCGGCTATGCTATCCTCTCTTCTTCCTTGATGACGATGACGGCCATCCCATCATCGTCTGGTACGCCAGCAGTGAAAGGAGGGTGTTGGAAATC CACAAGCAAGGAGTCCACAAGCAACGATGTGACGGTCACAACCTACTTTGGAGGCAAGCTCTACGTCGTTGACCATAATCGCGGTGAGGAACACCGTGTG CATGTTTTCTATAACCTTATCAATACTATGTCGGAGGAGGTGCATGTTTTCTATAACCTTATCAATACTATGTCGGAGGAGGAGGAGAAAGAGTGGGATG GTGGTCCTACTGTGAGATCGATTCCCTTCTCGTCCTCCATGCCAACGCCTTCTCCGAGAAATTATCTCTTGGTGGAACTCAACGGTGAACTCATCATCAT CCTCCGCCAGTGCTTCAGGCATGATGCCAAGGTCCAGTCTGTCTTGGTTGCCTTAAGCAACAACAACGATGGCACGATAGTCAAAGGCAATCACGTTTAC TATCTCAATTACAGTTGCGGCCATTGCACTCCCCGTAACATCAACTCGTACTGCGAAGCGTTGCAAGAAGTCTGTCGGCCTAGTGCTCATTGTGGCGTCT ACAGCCTTGAACACCAGAAGCTCGTCGAACACCATCCTCGTCTCCCAAGGTGCCACAACTATGTCTGGTTCTCCCCTGTACCATGGGACATTCGTAAGCA CTTGAAGAAGCAAAGTCCAGAGGAGAATCCATATCAGTGTCAACAACTAGAATGTAGCATTGGTAGTGCTGTAACCGACTGGGACGACAGTTTCCAAGCT GTATCATTGGCTGAGGAGGAGGACGATGACGACGACTACTACGATGAATATTATCAATAA
AA sequence Show only first row Show all	>Lus10019251 pacid=23141300 polypeptide=Lus10019251 locus=Lus10019251.g ID=Lus10019251.BGIv1.0 annot-version=v1.0 MEGRCESISSTWSILLPPLKSARLRCNYNDAFVQYFGYAILSSSLMTMTAIPSSSGTPAVKGGCWKSTSKESTSNDVTVTTYFGGKLYVVDHNRGEEHRV HVFYNLINTMSEEVHVFYNLINTMSEEEEKEWDGGPTVRSIPFSSSMPTPSPRNYLLVELNGELIIILRQCFRHDAKVQSVLVALSNNNDGTIVKGNHVY YLNYSCGHCTPRNINSYCEALQEVCRPSAHCGVYSLEHQKLVEHHPRLPRCHNYVWFSPVPWDIRKHLKKQSPEENPYQCQQLECSIGSAVTDWDDSFQA VSLAEEEDDDDDYYDEYYQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019251 [exp]	0	1
AT3G29180			Protein of unknown function (D...		Lus10037132 [exp]	2.6	0.7758
AT5G17200			Pectin lyase-like superfamily ...		Lus10014826 [exp]	3.0	0.7492
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	11.0	0.7505
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10034049 [exp]	20.8	0.7083
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	21.6	0.7375
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	22.6	0.6362
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	23.2	0.7036
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	27.0	0.6942
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	31.0	0.7224
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	32.2	0.7081

Compare expression of checked genes

Lus10019251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.