Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65720 731 / 0 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) AT1G08490 103 / 1e-23 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1) AT1G27980 48 / 1e-05 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011590 [exp] 819 / 0 AT5G65720 748 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10011572 [exp] 523 / 0 AT5G65720 439 / 1e-156 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10031670 [exp] 100 / 3e-22 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000600 [exp] 803 / 0 AT5G65720 716 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Potri.009G066000 [exp] 90 / 5e-19 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Potri.003G168800 [exp] 47 / 2e-05 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1) Potri.008G005101 [exp] 0 / 1 AT5G65720 99 / 9e-06 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10019252 pacid=23141314 polypeptide=Lus10019252 locus=Lus10019252.g ID=Lus10019252.BGIv1.0 annot-version=v1.0 ATGGCGACCTCGAAGCATCTAGCTTCCACCCTCCGCCGAACCCTAGCGAAATCCACCGCTCTCCGTGGCGGCCGTTTCTCCACCTCCGCCGCCGCAGCTG CAGCCGATTCCCCCACCGTGCCTAATTATGAGGATCTCGCTGGAGAGATAAGGATGAAAGGCGTGAAAATCTCGTCTCGGCCTCTGTATCTAGATATGCA GGCAACTTCGCCGGTGGATCCTCGCGTCCTCGACGCGATGATGCCTTACTCCGTCAGCCAGTACGGTAACCCGCACTCGCGAACTCACGTTTACGGTTGG GAGTCGGAGCAGGCGGTGGAGACGGCCCGCGGCCAGATCGCGGATTTGATAGGAGCGTCGCCGAAGGAGATCATTTTCACCTCCGGAGCAACGGAATCAA ACAACATCTCCGTTAAAGGAGTGATGAAGTTCTACAAGGAGAAGAAGAGGCATGTAATCACCACTCAGACGGAGCACAAGTGCGTATTGGATTCATGCCG CCATCTCCAACAAGAAGGATTCGACGTCACTTATCTGGCCGTCAAATCCGACGGACTTGTTGATTTGGAGAAGCTGCGAGCTGCGATTAGGCCTGATACA GGGCTTGTATCTGTTATGGCGGTGAACAATGAGATCGGAGTGATTCAGCCGATGGAAGAGATTGGACGGATTTGCAAAGAGTTCAATGTCCCTTTCCACA CCGATGCAGCTCAAGCATTAGGTAAGATTCCTGTCAATGTAGATGATTGGAATGTTAGTTTGATGTCATTGAGTGGCCACAAAATCTACGGCCCTAAAGG AATCGGAGCTCTGTACATGAGGAGACGTCCCAGAATCAGAGTAGAACCTCAAATGAATGGAGGTGGACAAGAGAGAGGGATTCGAAGCGGAACTGTTCCG ACTCCTTTAGTAGTCGGAATGGGAGCAGCCTGTGAGCTCGCTAAGAACGAAATGGCCTACGACGAGAGGAGAATCAAGGCTCTGCAAGAGAGACTACTGA AAGGGATTGAATCGAAACTCGATGGGATAGTGGTGAACGGGAGCGTGGAGAGGCGATACGCAGGGAACTTGAACATCTCGTTTGCGTATGTCGAAGGTGA GAGCTTGTTGATGGGACTGAAGGAAGTGGCTGTCTCGAGTGGGAGTGCTTGCACCAGTGCAAGCTTGGAGCCTTCTTATGTGCTGAGGGCGTTGGGTGTG GATGAGGACATGGCGCATACTTCGATTAGGTTCGGAATCGGGAGGTTTACTACCGAGGAAGAGATCGATAAGGCTGTCGAGCTTACGGTTGGACAGGTCG AGAAGCTGAGGGAGATGAGCCCCTTGTATGAGATGGTGAAGGAAGGTATCGACATCAAGTCGATCCAGTGGGCACAGCACTGA
AA sequence Show only first row Show all	>Lus10019252 pacid=23141314 polypeptide=Lus10019252 locus=Lus10019252.g ID=Lus10019252.BGIv1.0 annot-version=v1.0 MATSKHLASTLRRTLAKSTALRGGRFSTSAAAAAADSPTVPNYEDLAGEIRMKGVKISSRPLYLDMQATSPVDPRVLDAMMPYSVSQYGNPHSRTHVYGW ESEQAVETARGQIADLIGASPKEIIFTSGATESNNISVKGVMKFYKEKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLAVKSDGLVDLEKLRAAIRPDT GLVSVMAVNNEIGVIQPMEEIGRICKEFNVPFHTDAAQALGKIPVNVDDWNVSLMSLSGHKIYGPKGIGALYMRRRPRIRVEPQMNGGGQERGIRSGTVP TPLVVGMGAACELAKNEMAYDERRIKALQERLLKGIESKLDGIVVNGSVERRYAGNLNISFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV DEDMAHTSIRFGIGRFTTEEEIDKAVELTVGQVEKLREMSPLYEMVKEGIDIKSIQWAQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10019252 [exp]	0	1
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10037597 [exp]	1.0	0.9219
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	1.4	0.9152
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021441 [exp]	7.1	0.8741
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	7.7	0.9101
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	8.0	0.8967
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039008 [exp]	8.4	0.8984
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	8.7	0.9063
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10002353 [exp]	9.3	0.8590
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	9.5	0.9054
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027303 [exp]	12.4	0.8847

Compare expression of checked genes

Lus10019252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.