Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37820 108 / 1e-24 unknown protein AT2G22795 107 / 4e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011571 [exp] 643 / 0 AT4G37820 112 / 2e-25 unknown protein Lus10020507 [exp] 102 / 1e-22 AT4G33740 103 / 1e-23 unknown protein Lus10012453 [exp] 100 / 8e-22 AT4G33740 95 / 1e-20 unknown protein Lus10007239 [exp] 61 / 1e-10 AT2G22795 59 / 9e-11 unknown protein Lus10028240 [exp] 61 / 1e-10 AT2G22795 59 / 1e-10 unknown protein Lus10014955 [exp] 57 / 3e-08 AT5G52530 49 / 1e-05 dentin sialophosphoprotein-related (.1.2.3) Lus10038838 [exp] 55 / 2e-07 AT5G52530 70 / 2e-11 dentin sialophosphoprotein-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008600 [exp] 137 / 1e-33 AT2G22795 103 / 2e-22 unknown protein Potri.009G083900 [exp] 104 / 2e-23 AT4G33740 94 / 2e-20 unknown protein Potri.001G288800 [exp] 102 / 1e-22 AT4G33740 93 / 7e-20 unknown protein Potri.002G112800 [exp] 73 / 7e-14 AT4G37820 83 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019253 pacid=23141393 polypeptide=Lus10019253 locus=Lus10019253.g ID=Lus10019253.BGIv1.0 annot-version=v1.0 ATGTTCAAGTCCTCGCCGCGAAGGGGGCCGAGAACGAAAGGTTTCAAAGTAAAGCATGCTCTACAGCTATGTGTTCTGCTAGGAGTTTGCATCTGGCTGA TTTATCAAGTGAAGCATTCTCACGAGAAGAAGGATGAGTTGGAGGGAAATGTGAAGTCTGGAAGTGATGTACTGAAGCTTGGGAGGAAAGATCTCCTCCA GCCAGAAGTTGATGAAACCGTCACTAGAGATGACCAGCCATTGAAGTATGAAGAGGAAGAGAGCAAGCCGGATGAGAATGCGGGAGGAGGTGTCATTCCG GAGGAGGAATCTCAGAGCCATTTCAGTGACAAGACCGAACAGGGAGCTGACCATGGAAATGAAGAGAAAGAAGATGAGACAGAGAATAATACTAGTCAGG ATACTGTTAATGAAGGAGAGACCAAGGTGGAGGAGTCCAATGAAGAGACCAATGTGAACGATGGTGAAGCTGCAGGTACCGGAGATGAACGACAGGCCGA GAATGACCAAAATGACCTCAGCAAGGAGAGTGCTGGCGAAGAGAACAGTCAGGAGTCCGGAGAGCACATGAGCGATGAGAATGGGAATGTTGAGGGAAGT GGAGAGAAGAAACCTGAAGAGGTTACGGAAAATAAAGGGTCGGAAACAGATGTATCGGAGACATCGACAGAGCAGAAGGAACATGATGAGGATGATGGAC ACAGTAAGGAGGCAAGAGAGGAGCACTACAACGGTGACGATGCTTCTAGTGCAGTAGTCCATGAAGATCAAAATGTTAAACCAGAGGAGATGACTCAACA GTCAGAGAGCAAAGATAATGAACAAACGGATACGAGTCAAGCTGGTAAAGTGAATCAAAATGAGGTCTCAAATGGTAACGAAGAGGAGACTGCTCAGGAT CAAGTCGAGACATCCTCGAACAACAAGCAAGAGACATCAACAACAGAAGATTCGTCTGAAAACCAGGGTGCATCATCATCACAAAATGCAGAGGAGACTG CTCAGAATCAAGTTGATACATCCTCGAACAATGCAGATGGAACAGCTCAGAATGAAGTTGGAACGTCAGAGAGTTCATCATCTGGCGCTGAAGAACAGTC GTCCGCGGATAAGGTAACAGAGAAATCGGACACAGACAGTAACAGCCAGCAAGTAGATTCTTCAACCACTGCCACAGCCACAGAGAACGGAGATTCCAGT CCTGATGATAACTCTGGTTCTGCTGTATCAGATAAACAGTCTGAAACTTCCAGTGAAACATTGCCAGCAAGTGAAACTTCTGTAGATGCAGAGAAAAAGG AACAAGTTGATTCTTCTTCGCAATCCCAAGAGCAATCAACAACACCCTCAAACACAAATAATTCTGCTTCCAACGCTGACAACAATCAAGCTTCTTCCGA TTCATCAAGCTCCGAAGCAGCAAACGACAATGGTGGCCAGAACAACAGTGGCGAATCTGTTCCAGCCAGCAACGATGACAGTGATGGAACCAAGAGTGAG GACAGCAATGTGAATCAAGATGTGAGTCATACGGACACCAGCAACAATGGAGGAAGCACTGAGAACCAGTCCAAAGATGAAAGCCAGACTGAGAAAGCTA GTTCAAGCTCGACCGATGTTAGCCAGGACAACAATGGCGCCAATGTAAACGAAAACAAAGACAGCCAACCACAAGAAGTTGACTCATCAGGGTCTTCAAC AGCAAACAGCAGAACAGAGGAGACCCAGACCGAAGGAAGTGGCTCAGTCGATACATCTGCAAGTTCGTCGGTTTCTGAAGAGATAAATGGCGATCATACT GGTGCTGCAGCTGAATGA
AA sequence Show only first row Show all	>Lus10019253 pacid=23141393 polypeptide=Lus10019253 locus=Lus10019253.g ID=Lus10019253.BGIv1.0 annot-version=v1.0 MFKSSPRRGPRTKGFKVKHALQLCVLLGVCIWLIYQVKHSHEKKDELEGNVKSGSDVLKLGRKDLLQPEVDETVTRDDQPLKYEEEESKPDENAGGGVIP EEESQSHFSDKTEQGADHGNEEKEDETENNTSQDTVNEGETKVEESNEETNVNDGEAAGTGDERQAENDQNDLSKESAGEENSQESGEHMSDENGNVEGS GEKKPEEVTENKGSETDVSETSTEQKEHDEDDGHSKEAREEHYNGDDASSAVVHEDQNVKPEEMTQQSESKDNEQTDTSQAGKVNQNEVSNGNEEETAQD QVETSSNNKQETSTTEDSSENQGASSSQNAEETAQNQVDTSSNNADGTAQNEVGTSESSSSGAEEQSSADKVTEKSDTDSNSQQVDSSTTATATENGDSS PDDNSGSAVSDKQSETSSETLPASETSVDAEKKEQVDSSSQSQEQSTTPSNTNNSASNADNNQASSDSSSSEAANDNGGQNNSGESVPASNDDSDGTKSE DSNVNQDVSHTDTSNNGGSTENQSKDESQTEKASSSSTDVSQDNNGANVNENKDSQPQEVDSSGSSTANSRTEETQTEGSGSVDTSASSSVSEEINGDHT GAAAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37820			unknown protein		Lus10019253 [exp]	0	1
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	2.8	0.8743
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10014495 [exp]	3.5	0.9014
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	4.2	0.8632
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	4.2	0.8758
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	7.7	0.8726
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	7.9	0.8781
AT1G10790			unknown protein		Lus10022968 [exp]	8.5	0.8652
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	9.5	0.8657
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	13.2	0.8741
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	15.3	0.8225

Compare expression of checked genes

Lus10019253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.