Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37810 74 / 7e-18 unknown protein AT5G10310 44 / 9e-07 unknown protein AT3G22820 41 / 1e-05 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT4G14723 38 / 0.0002 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT2G30370 38 / 0.0005 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011570 [exp] 152 / 5e-49 AT4G37810 79 / 8e-20 unknown protein Lus10011591 [exp] 66 / 9e-15 AT4G37810 102 / 6e-29 unknown protein Lus10007240 [exp] 63 / 3e-13 AT4G37810 75 / 2e-17 unknown protein Lus10028241 [exp] 56 / 4e-11 AT4G37810 74 / 2e-18 unknown protein Lus10035922 [exp] 52 / 2e-09 AT5G10310 100 / 2e-28 unknown protein Lus10025740 [exp] 48 / 6e-08 AT5G10310 100 / 2e-28 unknown protein Lus10006016 [exp] 48 / 3e-07 AT3G13898 76 / 4e-17 unknown protein Lus10008387 [exp] 46 / 4e-07 AT3G13898 76 / 9e-19 unknown protein Lus10006616 [exp] 40 / 1e-05 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112900 [exp] 71 / 2e-16 AT4G37810 90 / 9e-24 unknown protein Potri.007G095400 [exp] 47 / 1e-07 AT5G10310 105 / 2e-30 unknown protein Potri.003G042300 [exp] 47 / 2e-07 AT3G13898 80 / 4e-20 unknown protein Potri.005G073700 [exp] 45 / 6e-07 AT5G10310 102 / 7e-29 unknown protein Potri.018G130700 [exp] 45 / 7e-07 AT1G80133 62 / 1e-13 unknown protein Potri.013G155500 [exp] 37 / 0.0008 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019254 pacid=23141387 polypeptide=Lus10019254 locus=Lus10019254.g ID=Lus10019254.BGIv1.0 annot-version=v1.0 ATGAGCTACGACTCAGTATACTCCTCTGGCCGCCATAGCCGTTACTTGATCCCGACCTGGTTCGCAATACTTCTCTTGATTTCGAGCTTCCGCGCCGAAG CAGGCAGATTGATTATCGGATCACGGCCTCCAAGATGCGACGACAGAATTAGGTGTGTCAGTTCTTGTGAGAGATGTGAAGCGATTCAGGTTCCAGTTAA TCCGCAGGTGAAACGGATTCGAGGATCGTTCTCTGTTATTGGAACAGAGGAGTACGGCGGAGGAGGAGGAGGAGGAGAGTTCAGGTACGATTACAAGCCG ATGAGATGGAAATGCAAGTGCGGCAACTCAATCTTCAGCCCTTAG
AA sequence Show only first row Show all	>Lus10019254 pacid=23141387 polypeptide=Lus10019254 locus=Lus10019254.g ID=Lus10019254.BGIv1.0 annot-version=v1.0 MSYDSVYSSGRHSRYLIPTWFAILLLISSFRAEAGRLIIGSRPPRCDDRIRCVSSCERCEAIQVPVNPQVKRIRGSFSVIGTEEYGGGGGGGEFRYDYKP MRWKCKCGNSIFSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37810			unknown protein		Lus10019254 [exp]	0	1
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10038607 [exp]	7.3	0.8795
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	12.0	0.9186
AT1G75580			SAUR-like auxin-responsive pro...		Lus10012432 [exp]	13.1	0.8852
AT3G25400			unknown protein		Lus10015730 [exp]	16.1	0.7986
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	17.8	0.9149
AT4G10810			unknown protein		Lus10010114 [exp]	19.8	0.8785
					Lus10041871 [exp]	23.9	0.9147
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	28.3	0.9137
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	32.1	0.9124
					Lus10021217 [exp]	34.9	0.9121

Compare expression of checked genes

Lus10019254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.