Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15680 3433 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035141 [exp] 3135 / 0 AT5G15680 3135 / 0.0 ARM repeat superfamily protein (.1) Lus10031961 [exp] 2912 / 0 AT5G15680 2930 / 0.0 ARM repeat superfamily protein (.1) Lus10031962 [exp] 1129 / 0 AT5G15680 1224 / 0.0 ARM repeat superfamily protein (.1) Lus10035142 [exp] 530 / 2e-173 AT5G15680 541 / 3e-178 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106100 [exp] 3500 / 0 AT5G15680 3580 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019255 pacid=23141291 polypeptide=Lus10019255 locus=Lus10019255.g ID=Lus10019255.BGIv1.0 annot-version=v1.0 ATGAAGGCGGGAAGTGCCGCGAAGCTGATCGTTGATGCGCTTCTGCAGCAGTTTCTTCCTCTTGCCAGGCGCCGAATCGAAACAGCTCAAGCTCAGGATG GACAATACCTTCGGCCGTCTGATCCTGCTTACGCGCAAGTGTTGGATTCCTTAGCTATGGTTGCTGAACATACTCCGGTTCCTCTTTTAGAAGCTCTGCT TAGATGGCGAGAGAGTGAATCTCCTAAAGGTGCAAATGATGCGTTCACATTCCAAAGAAAGCTTGCTGTGGAGTGCATTTTCTCCTCAGCGTGCATTCGT TTTGCGGAGTGCTGCCCGCAGGAGGGACTTACTGAGAAGCTGTGGTCTGGGCTTGAAAATTTTGTATTTGACTGGTTAATTAATGCCGACAGAGTTGTTA GCCAGGTTGATTATCCCTCATTGGTCGATATGCGAGGGCTCCTCTTGGATCTAGTTGCTCAACTCCTTGGTGCCTTATCACGTATCAGGTTTAGTTCAAT AACTGAGCGCTTTTTCATGGAGCTAAATACCCGCCGGATTGACACTAGTGCTGCCCGAAGTGAAGCACTCAGTATTATCAATGGGATGAGATACTTGAAG ATTGGGGTTAAGAATGAGGGGGGCTTACATGCATCTGCATCTTTTCTGGCCAAAGCAAATCCTCTTAATCGTGCTCCGCACAAGCGCAAAAGTGAGCTCT ATCATGCACTGTGTAGTATGCTTTCAAGCATCCTTGCTCCACTGGCGGATGGCGGAAGAAACCAATGGCCACCAACAGGGATAGGTAATGCACTTACCCT GTGGTATGAGGCTGTGGGGCGAATAAGAATGCAACTTCTACATTGGATGGACAAACAAAGCAAGCATATAGCTGTTGGCTACCCGCTGGTTACTCTACTT CTCTGCCTCGGTGATCCTCAAATATTTCATATCAATTTAAGCCCTCACATGGACCAACTTTACAAGCTATTAAGGGACAAGAACCATCGTTTCATGGCTT TGGACTGCCTTCATCGAGTTATGAGATTTTACTTAAGTGTCCATGCAGCTAGTCAGCCTGCAAACCGCATATGGGACTACCTCGACAGTGTAACTTCTCA GTTGTTAACGGCTATAAAGAAAGGGATGCTCACACACGACGTGCAACAGGATAAACTTGTAGAGTTTTGTGTGACAATTGCTGAGCACAATCTTGATTTT TCCATGAACCATATGATATTAGAGTTGCTAAAGCATGATAGTCAAAGTGAAGCAAAGGTTATTGGTCTTCGTTCTTTGCTTGCCATCATCATGTCACCTT CCAGCCCATATGTCGGCTTGGAAATATTTAAAGGACATGACATTGCTCACTACATACCAAAAGTTAAGGTAGCAATCGAGTCAATTTTGAGGTCTTGTCA TAAGATTTACTGTCAGGCTCTTTTGACGTCTTCAAGAACCACCATAGATGCTGTAACCAAGGAAAAGTCTCAAGGGTACCTCTTTCGTTCGGTGTTGAAG TGCATACCATATTTAATCGAAGAAGTTGGCCGTAGTGATAAGATGAGTGAGATAATTCCTCAGCATGGAATAAGCATTGATCCAGGTGTCCGTGAGGAAG CAGTACAAGTTCTGAACAGGATTGTTAGATACCTTCCTCATCGGAGATTTGCAGTTGTGAGGGGAATGGCCAACTTTGTCCTCCGGCTTCCGGATGAATT TCCTCTTCTTATTCAGACATCATTAGGACGCTTGTTAGACCTCATGCGTTTTTGGAGATCCTGTTTGATTGATGATAGATTAGAGATTAGTACTGATGAT ATGAGGCGTGTGCCACAGAGAAATGAAGGATTTAAGAAATCATCTTTCCATCGTTCAGATGTAATTGAGTTTCATGCCTCCAACATTGATGCTGTTGGAT TAATCTTCCTTACTTCTGTGGATACCCAAATTAGGCACACAGCTTTGGAACTACTGCGCTGTGTGCGTGCCCTGCGGAATGATATAAGTGACCTCACAGC AATTGGGCAGGTTAATCATTACATGAGAAGTGAAGCTCAGCCAATATTTGTTATTGATGTCCTAGAAGAACATGGGGACGACATTGTTCAAAGCTGTTAT TGGGATTCTGGGCGGCCATTTGATTTGAGACGTGAGTCTGATGCCATACCTCCTGAAGTGACTCTGCAATCTATTATTTTTGACAGTCCTGACAAAAACA GATGGGCCAGGTGTCTCAGCGAACTTGTTAAATATGCAGCTGAGCTTTGCCCAAGCTCCGTTCAGGAAGCAAAGGTTGAGGTAGTGCAACGTCTTGCGCA TATTACACCTGTTGATTTAGGTGGAAAGGCATATCAGTCGCAGGATGGAGAAAACAAACTTGATCAGTGGCTCATGTATGCGATGTTTGCATGCTCTTGT CCGCCAGACAGTAAAGAATCTGGTGGTTTTGCAGCAGCAAAAGATCTTTACCATCTTATATTCCCATCACTAAGATCTGGTTCTGAAGGGAACACACACG CAGCTACTATGGCTCTTGGTCGATCACATTTGGAAGCATGTGAAATCATGTTTAGTGAGCTGTCTTCTTTTATTGATGAAGTTTCTTCGGAAACTGAAGG AAAACCAAAGTGGAAGAGTCAAAAATCTCGCAAGGAAGAGCTCCGTGTGCACATTGCAAATATTTACAGAACCGTTGCCGAAAATGTCTGGCCTGGCGTG CTTAGTCGTAAGCCTAAGCCAGTTTTCCGTCTTCATTATCTCAGGTTCATTGATGACACCACCAGGCAGATCCGGGCAGCTGCCACTGAGAACTATCAGG AAATGCAGACTGTTCTTCGGTATGCTCTTGCATCCGTTATAAGGTCCCTTGCACCTGAATTTGTTGACTCGAGATCGGAGAAATTTGACCTTAGAATGAG AAAGCGGCTGTTTGATCTCCTGCTTGCCTGGAGTGATGACTCTGGCAGTTCATGGGCTCAAGATGGTGCTAGTGATTACAGGCGCGAAGTTGACCGTTAT AAAGCTTCCCAGAACTACAAGTCAAAAGATTCCATAGAGAAAATCTCATTCGACAAAGATCTGAGCGAACAGCTAGAGGCGATCCAGTGGGCCTCCATGA ATGCTATGGCTTCGCTCTTATACGGACCGTGCTTCGATGACAATGCCAGAAAAATGAGCGGTCGAGTCATATCTTGGATCAACAGTTTGTTTAATGATCC TGCTCCTAAACCTGCATTTGGTTTCTCTCCTTCAACTCCATCATTCTACAAATACTCTGGGGAAAGCACACGTGGAGTTTCTGGTCGTGACAGACATAGG GGTAATCATCACCGTGTTGCTTTGGCTAAGTTGGCATTGAAGAATCTTCTGCTTACTAATTTGGATCTTCTTCCAGCTTGCATTGACCAGTGCTACTACT CTGATGCTGCTATAGCTGATGGTTACTTCAGTGTGTTAGCTGAGGTCTACATGCGCCAAGAGATACCAAAATGTGAAATACAACGGCTTCTTAGCCTGAT TCTGTACAAGGTCGTAGACCCCAATAGGCAGATTCGCGATGATGCACTTCAGATGCTGGAGACACTTTCGTATCGCGAATGGGCTGAAGATGGCTTCGAG GGATCAGGGGGTTATCGAGCTGCTGTAGTGGGTAACCTCCCCGATTCCTACCAGCAGTTCCAGTATAAACTCTCATGTAAACTTGCCAAAGACCACCCAG AGTTGAGCCAACTTCTATGTGAAGAAATCATGCAGCGTCAACTTGATGCCGTTGATATCATTGCACAGCACCAGGTCTTGACTTGTATGGCCCCATGGAT CGAAAATCTAAATTTCTGGAAACTCAAGGACTCTGGCTGGAGTGATAGACTACTGAAGAGCCTTTATTATGTAACATGGCGGCACGGGGATCAATTCCCC GACGAAATCGAGAAGCTCTGGAGCACAATCGCTAGCAAAGCCAGGAACATCAGCCCGGTTTTGGATTTCTTGATCACAAAGGGGATTGAAGACTGTGATT CCAACGCATCTGCAGAGATAAGCGGCGCATTCGCCACGTATTTCTCTGTTGCTAAGAGGGTGAGCTTGTATTTAGCTCGGATATGTCCGCAGCGTACGAT CGACCACTTGGTTTACCAATTGGCTCAACAAATGTCAGTAGACAGCATCGAAAACGTCAGCCCAAGCATAGCCAAAGGTGATCCGAGTGGGAATTTCGTA CTGGAATTCTCTCAGGGCCCTTCAGCTACACAATTACTCGGTGCTGTTCCGGATCCTCAGCTATACATGTCACCATTACTCGTCCGGGGCTCCTTCGATG CTGCGCCGTTTAGAAATACAAGTGGAAGTCTCAGCTGGGGAATTACTCCTGGTGTAGCTGGAAGAAGCTCCTCTGGTCCTTTGAGTCAAATGCCTATGGA GTTTAATGTTCCTCCTGTAACAGCAAGCCGTTCCGGCCAGCTGATCCCATCGATAGTAAACAGCGTTCGAGGTACAACGGGAAGTTTGCGGAGTAGGCAT GTGTCTCGAGATAGCGGAGATTACTTCATCGACACCCCAAACTCTGGGGATGACGGTTTGTATCCTGCTGTTGGTATTAATGCCAAAGAACTTCAGTCAG CTCTCCAAGGACATCAGCAGCATTCGATCACTCATGCCGATATAGCGCTGATCCTCCTTGCTGAAATTGCGTACGAGAACGACGAAGATTTCCGCGAGCA CTTGCCATTACTCTTCCATGTCACGTTTGTTTCGATGGATAGTTCAGAGGATATTGTGTTGGAACACTGCCAGCATCTGCTAGTTAATTTGCTCTACTCG TTAGCTGGCCGACACTTGGAACTCTACGAAGTCGAAAATAGCGACGGAGAGAACAAGCAGCAGGTTGTCAGTCTGATCAAGTACGTACAATCGAAACGAG GAAGCATGATGTGGGAGAACGAGGATCCCACGGTCTCGAGACCCGTGCTCCCGAGCGCGGCACTTCTCTCTGCACTCGTTCAGAGCATGGTCGATGCGAT AATCTTCCAAGGAGATCTTCGTGAGACTTGGGGCGCCGAAGCGCTCAAATGGGCGATGGAGTGCTCGTCAAGGCACTTAGCTTGCCGGTCCCACCAGATC TACCGTGCCCTTCGACCGAGTGTAACAAGCGATACATGTGTCTCCCTACTCAGATGTCTCCACAGATGCCTAGCGAACCCGGTCCCGCCCGTGTTAGGGT TTACAATGGAGATATTGCTTACCTTGCAAGTAATGGTGGAGAATATGGAGCCGGAGAAGGTTATACTTTATCCTCAACTCTTCTGGGGCTGTGTGGCAAT GATGCACACGGATTTCGTTCACGTTTACTGCCAGGTACTCGAGCTCTTCTCGCGAGTAATTGACCGGCTCTCGTTTCGAGACCGGACGACAGAGAACGTG CTTTTATCTAGTATGCCTCGCGACGAGCTTGATTCTGGCGATGATGCTGCCGATTTCCAGCGGACCGAATCGCTAACATTATCCCGTGGGAATCTGCCGA AATTCGAAGGGGTGCAGCCTCTTGTCCTTAAAGGACTCATGTCGACAGTTAGCCACGATATTTCCATAGAAGTCCTGTCAAGAATCACAATCCACTCTTG CGATTCTATATTCGGAGATGGAGAGACGAGACTCCTCATGCACATCGCCGGCTTGCTTCCTTGGCTCTGCCTACAGCTCAACCGGGTCCCACCAATGCGA AACCATAGGGCATGCTCGGTGGCGAACAACATCGCGGTATGGTGCGTGGCGAAATCGAGGAACGAGCTGGCGACTGTATTCGTGGCGTACGCCCGGGGAG AGATTCGTAGCATCGATAACCTCTTAGCTTGTGTCTCCCCGTTGTTATCATCCGAGTGGTTCCCGAAGCACTCGACCTCGGCCTTCGGGCATTTGCTCCG GTTACTCGAGAGAGGGCCGGTCGAGTACCAGCGGGTCGTACTGCTAATTCTCAAGGGACTTCTCCAGCACACTCCCATGGACTCCTCTCAGAGCCCGCAC ATGTATGCAATCGTTTCGCAGCTAGTCGAGAGCCCTTTGTCGTGGGAGGCACTTAGCGTCCTGGAAGCCTTGCTGCAGAGCTGCGGCTCCAACATGCACG AGACCGCATCATCATCATCGTACGAAAACAGGATGCTTGGCCCTCAAGCATCGTTCAAGATTCGGAGCGGGCCTTTACACTACGCTATGGGATCAGGAAT CCCGGTTTCGAATCCCGGTGGAGGATTCGAAACCAGGATTCCTCCCCGGGAGGTGGCATTGCAGAATACGAAGCTGATTCTCGGGCGAGTTCTCGACAAT TGTGCTCTGGGGAGGAGAAGGGATTACAAACGTCTGGTTCCATTTGTAAACAACATTGGATCATGA
AA sequence Show only first row Show all	>Lus10019255 pacid=23141291 polypeptide=Lus10019255 locus=Lus10019255.g ID=Lus10019255.BGIv1.0 annot-version=v1.0 MKAGSAAKLIVDALLQQFLPLARRRIETAQAQDGQYLRPSDPAYAQVLDSLAMVAEHTPVPLLEALLRWRESESPKGANDAFTFQRKLAVECIFSSACIR FAECCPQEGLTEKLWSGLENFVFDWLINADRVVSQVDYPSLVDMRGLLLDLVAQLLGALSRIRFSSITERFFMELNTRRIDTSAARSEALSIINGMRYLK IGVKNEGGLHASASFLAKANPLNRAPHKRKSELYHALCSMLSSILAPLADGGRNQWPPTGIGNALTLWYEAVGRIRMQLLHWMDKQSKHIAVGYPLVTLL LCLGDPQIFHINLSPHMDQLYKLLRDKNHRFMALDCLHRVMRFYLSVHAASQPANRIWDYLDSVTSQLLTAIKKGMLTHDVQQDKLVEFCVTIAEHNLDF SMNHMILELLKHDSQSEAKVIGLRSLLAIIMSPSSPYVGLEIFKGHDIAHYIPKVKVAIESILRSCHKIYCQALLTSSRTTIDAVTKEKSQGYLFRSVLK CIPYLIEEVGRSDKMSEIIPQHGISIDPGVREEAVQVLNRIVRYLPHRRFAVVRGMANFVLRLPDEFPLLIQTSLGRLLDLMRFWRSCLIDDRLEISTDD MRRVPQRNEGFKKSSFHRSDVIEFHASNIDAVGLIFLTSVDTQIRHTALELLRCVRALRNDISDLTAIGQVNHYMRSEAQPIFVIDVLEEHGDDIVQSCY WDSGRPFDLRRESDAIPPEVTLQSIIFDSPDKNRWARCLSELVKYAAELCPSSVQEAKVEVVQRLAHITPVDLGGKAYQSQDGENKLDQWLMYAMFACSC PPDSKESGGFAAAKDLYHLIFPSLRSGSEGNTHAATMALGRSHLEACEIMFSELSSFIDEVSSETEGKPKWKSQKSRKEELRVHIANIYRTVAENVWPGV LSRKPKPVFRLHYLRFIDDTTRQIRAAATENYQEMQTVLRYALASVIRSLAPEFVDSRSEKFDLRMRKRLFDLLLAWSDDSGSSWAQDGASDYRREVDRY KASQNYKSKDSIEKISFDKDLSEQLEAIQWASMNAMASLLYGPCFDDNARKMSGRVISWINSLFNDPAPKPAFGFSPSTPSFYKYSGESTRGVSGRDRHR GNHHRVALAKLALKNLLLTNLDLLPACIDQCYYSDAAIADGYFSVLAEVYMRQEIPKCEIQRLLSLILYKVVDPNRQIRDDALQMLETLSYREWAEDGFE GSGGYRAAVVGNLPDSYQQFQYKLSCKLAKDHPELSQLLCEEIMQRQLDAVDIIAQHQVLTCMAPWIENLNFWKLKDSGWSDRLLKSLYYVTWRHGDQFP DEIEKLWSTIASKARNISPVLDFLITKGIEDCDSNASAEISGAFATYFSVAKRVSLYLARICPQRTIDHLVYQLAQQMSVDSIENVSPSIAKGDPSGNFV LEFSQGPSATQLLGAVPDPQLYMSPLLVRGSFDAAPFRNTSGSLSWGITPGVAGRSSSGPLSQMPMEFNVPPVTASRSGQLIPSIVNSVRGTTGSLRSRH VSRDSGDYFIDTPNSGDDGLYPAVGINAKELQSALQGHQQHSITHADIALILLAEIAYENDEDFREHLPLLFHVTFVSMDSSEDIVLEHCQHLLVNLLYS LAGRHLELYEVENSDGENKQQVVSLIKYVQSKRGSMMWENEDPTVSRPVLPSAALLSALVQSMVDAIIFQGDLRETWGAEALKWAMECSSRHLACRSHQI YRALRPSVTSDTCVSLLRCLHRCLANPVPPVLGFTMEILLTLQVMVENMEPEKVILYPQLFWGCVAMMHTDFVHVYCQVLELFSRVIDRLSFRDRTTENV LLSSMPRDELDSGDDAADFQRTESLTLSRGNLPKFEGVQPLVLKGLMSTVSHDISIEVLSRITIHSCDSIFGDGETRLLMHIAGLLPWLCLQLNRVPPMR NHRACSVANNIAVWCVAKSRNELATVFVAYARGEIRSIDNLLACVSPLLSSEWFPKHSTSAFGHLLRLLERGPVEYQRVVLLILKGLLQHTPMDSSQSPH MYAIVSQLVESPLSWEALSVLEALLQSCGSNMHETASSSSYENRMLGPQASFKIRSGPLHYAMGSGIPVSNPGGGFETRIPPREVALQNTKLILGRVLDN CALGRRRDYKRLVPFVNNIGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15680			ARM repeat superfamily protein...		Lus10019255 [exp]	0	1
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10019156 [exp]	1.4	0.7984
AT5G49960			unknown protein		Lus10036585 [exp]	23.5	0.7756
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	27.1	0.7016
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	33.0	0.7110
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	47.5	0.6917
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	48.1	0.7324
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	53.3	0.6488
AT5G59830			unknown protein		Lus10024426 [exp]	54.0	0.6959
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	77.4	0.6642
AT3G56250			unknown protein		Lus10030552 [exp]	87.5	0.6677

Compare expression of checked genes

Lus10019255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.