Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37790 161 / 5e-49 HD HAT22 Homeobox-leucine zipper protein family (.1) AT5G06710 157 / 7e-47 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT2G22800 153 / 8e-46 HD HAT9 Homeobox-leucine zipper protein family (.1) AT4G16780 152 / 2e-45 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT3G60390 150 / 4e-44 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT5G47370 140 / 6e-41 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 140 / 1e-40 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT4G17460 136 / 4e-39 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G01430 132 / 8e-38 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 127 / 8e-37 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011569 [exp] 324 / 1e-113 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10004161 [exp] 162 / 2e-48 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10004759 [exp] 160 / 3e-48 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10021064 [exp] 158 / 5e-48 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10007849 [exp] 160 / 7e-48 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10016254 [exp] 154 / 3e-45 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 153 / 7e-45 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10004377 [exp] 145 / 4e-42 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 144 / 5e-42 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008200 [exp] 169 / 4e-52 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.005G147100 [exp] 169 / 1e-51 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.001G155100 [exp] 156 / 1e-46 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.002G113400 [exp] 155 / 1e-46 AT4G37790 210 / 3e-67 Homeobox-leucine zipper protein family (.1) Potri.001G229700 [exp] 154 / 3e-45 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.003G079800 [exp] 152 / 6e-45 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.016G059000 [exp] 152 / 1e-44 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.006G193700 [exp] 151 / 1e-44 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 146 / 6e-44 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.002G136400 [exp] 147 / 2e-43 AT3G60390 285 / 5e-96 homeobox-leucine zipper protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10019256 pacid=23141336 polypeptide=Lus10019256 locus=Lus10019256.g ID=Lus10019256.BGIv1.0 annot-version=v1.0 ATGGAGGATACCAACCTTCTCCTAAATCTAACTCTCTCCAACCATCACCATTTCCCCGCAGCCGGTGAGCCCAGCGACAACTCCGTCGACGTGGGGGCTT CACTCACCCTCTCCCTCCTCTCCAATCACCGGCAACAGAGTCCGGAATCGGCAAAGAGGGAGAGGGAGATTGTTGTTAGCAGTACGGATGATGATGAGGA AGCGGAGACGACGACGAGGGTGTCGTCCGGTAAGGTGAGCGACGAGGATGATGGCGGCTGCGGTGGAAACAGGAAGAAGCTCCGGCTGACTAGGGATCAG TCGGCTCTGTTGGAGGAGAATTTCAAGCACCATTCTACTCTTAGCCCTAAGCAAAAGCAAGATCTAGCGAGGCAATTAAAACTACGGCGCCGTCAGGTTG AAGTTTGGTTCCAGAACAGGCGAGCCAGGTCAAAGCTCAAGCAGACCGAAGTCGACTGCCAGCTTCTGAAGAAGTGCTACCAGTCGCTAACCGACGAGAA CAGCAAGCTCAAGAAGGAGGTCCATCAACTCAAGGCGGCGGCAGCAGTTGAAACGGCGCCGTTTTACAGCATGACAGTCACTCTGTGCCCGTCGTGCGGA ACAAAGGGCAGCGGCGGCGGCTTCACGGATCCATCGTCAAGTGCTGCGTGTTAA
AA sequence Show only first row Show all	>Lus10019256 pacid=23141336 polypeptide=Lus10019256 locus=Lus10019256.g ID=Lus10019256.BGIv1.0 annot-version=v1.0 MEDTNLLLNLTLSNHHHFPAAGEPSDNSVDVGASLTLSLLSNHRQQSPESAKREREIVVSSTDDDEEAETTTRVSSGKVSDEDDGGCGGNRKKLRLTRDQ SALLEENFKHHSTLSPKQKQDLARQLKLRRRQVEVWFQNRRARSKLKQTEVDCQLLKKCYQSLTDENSKLKKEVHQLKAAAAVETAPFYSMTVTLCPSCG TKGSGGGFTDPSSSAAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10019256 [exp]	0	1
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	16.0	0.6836
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	23.3	0.6645
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10038349 [exp]	51.1	0.5924
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10027536 [exp]	56.1	0.6259
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10018412 [exp]	63.1	0.6166
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	78.0	0.6104
AT5G53590			SAUR-like auxin-responsive pro...		Lus10005781 [exp]	92.8	0.6058
					Lus10008146 [exp]	109.5	0.5772
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10042582 [exp]	130.7	0.5498
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	151.8	0.5636

Compare expression of checked genes

Lus10019256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.