Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65770 788 / 0 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 771 / 0 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G67230 230 / 4e-62 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G13220 202 / 6e-53 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 164 / 4e-41 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011568 [exp] 1459 / 0 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10034263 [exp] 241 / 3e-65 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034383 [exp] 240 / 4e-65 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10003075 [exp] 209 / 5e-55 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034075 [exp] 172 / 2e-43 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034076 [exp] 158 / 4e-39 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003074 [exp] 145 / 5e-35 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034300 [exp] 951 / 0 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Potri.017G111400 [exp] 239 / 5e-65 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.008G114800 [exp] 225 / 3e-60 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Potri.015G024900 [exp] 51 / 2e-06 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019257 pacid=23141399 polypeptide=Lus10019257 locus=Lus10019257.g ID=Lus10019257.BGIv1.0 annot-version=v1.0 ATGGCGAGCCCGATCGTGCCGAGCAGTAGTGGTAGTAGTAGTAGGGCTTTGTCGCTGACTCCAGGTGCGAGGGTTAAGCCGGTGAGCGACGACACTACGA TCTGGAAGCGGCTTAAGGAGGCTGGGTTCGATGACGATTCGATTCAGAGGAGGGACAAGGCTGCTCTGATTTCGTACATCGCTAAGCTCGAAACTGAGAA CTTTGATCTTCAACACCACATGGGTCTTGTACTGTTGGAGAGAAAGGAATCGTCTGAAAAGCACACACAGCTGGAAGCTGCAGCAGAAGCTTCTGACCTG TTGCGAAGACGTGAACAAGCAGTTCATGCAACTGCCTTGGCAGAGGCAAAGAAAAGAGAAGAAAGTTTGAAGAAGGCTCTAGGAGTGGGAAAAGAGTGTA TATCTAGTATAGAGAAAACCCTGCATGAGATGCGTGCAGAATGTGCAGAGACCAAAGTTGCAGCTGAATCAAAATTGGTTGAAGCACGCAATATGGTAGA AGAAGCCCAGAAAAAGATCGTCGATGCAGAAGAGAAATTGCGCACAGCGGAATCTTTGCAAGTTGAAGCCAACTGTAGTAAGCGAGCTGCTGATAGAAAA CTCCAGGAAGTTGAAGCACGTGAAAGAGATCTTACTAGGCGTATGAGTGAATTTAAATCTGATTGCAATGCTAGAGAGAAGGAAGTTGATCTCGAGAGGC AACACCTGAGTGAAAGGAGGAAGTTTCTCCAACAGGAGCATGAGAGATTGCTCGATGGCCAAATGCTTTTGAACCAGAGGGAGGATTACATTGCTAGTAA ATCTCAAGAGCTTAGCCGGGTGGAAAATGAGTTGGAAGTATCAAGGGCTAAACTTGAAGAAGAACGTAGACACCTTAATGAGGAGAAGTCTAAATTGGAG TTGGCTATGGCGTCTCTGTCTCAACGAGAACAGGCTCTTGCTGAGAGGGAAAATAACTCGAACAAGAGAGAGCGGGAACTACTTGTTATGCAGGAAAAGC TGGCCAGCAAAGAATCTGCTGCAATAAGAAAGGTCAGTGCCAATCATGAGGCCATTCTGAGAACCAGAAAGTCAGAATTGGAAGCTGAGTTACAAGTGAG GCGTAAGGAATTGGAAGATGAGCGTGAGTGGAAAAGAAGGGCGTGCGAGTTGAGGGAGGTTGACCTTAGCCAACGTGAAGATGAGTTGAGAGAGAAGGAA CATGAGTTGGATGCTCAAACTAGAGGTCTAGCAGAGAAAGAGAAGGATGTGGCGGAAAAGATTAGTATTGTTGATGAAAAAGAAATGCGGTTAGTCATTG CTGAAAAGGATATTGAGATTAAGACAATCCTTTTACAGAAAGAAGCAGAAGAAATCAAACGCATCAAACTAGAGCTTCAGGAGTCATTGGTTTCCTTGGA AGACAAAAGGTTGCAGGTTGATAGTGCTAAGGATAAGTTGGAGACCATGAAAACTGAAACACATGAGCTGTCGGATCTGGAAGTCAGACTAAAAGAAGAA GTTGACCTCGTGAGGGCCCAAAAAGTTGAGCTCTTGGCTGAAGAGGAGCGACTGAAAGTGGAGAAGTCCAAATTCGAAGCTGAGTGGGAGTTAATTGATG AGAAAAGAGAGGAGTTGCGTAAAGAAGCCGAACGTGTGGCTGTCGAGAGAGAAGCCATTTCCAAGTTGCTGAAGGATGAGCGTGATAGCTTAAGATTAGA AAAGGAAACATTGCGCAACCAACACGAGCGTGATATCGAGTTGTTGAACAGTGAGCGGGAGGAGTTCATGAATAAGATGATACATGAGCGCTCCGACTTG TTTAACAAGATTCAGAAGGAGCACGCTGATTTCTTGTTGGGAATAGAGGTGCGGAAGAGGGAATTGGAGAGTAGCATTGAAAAGAGACGCGAAGAAGTCG AATGTTATCTTACAGACAAGGAGAAAGCTTTTGATCTTGAGAAGAGGAATGAAATGGAGAACATACACTCTCTCAAAGAAAAGGCAGAGCGAGAACTTAA GCAAGTGGCTCTGGAAATGGAGAAGCTTGATGCTAAGAGACAAGAGCTTCTTGGGGATCGTGAACAGATGGAGAAAGAGTGGGCGGTATTAAGCGGCTCT ATTGAGGAACTCAAGAGTCAAACGGAGAGACTGCAGAAGCAGAGGGAATTGCTTCACGCCGAGAGTCTAGAAGTCTCTACTCAAATCGAGGATTTGCAAA GGCTGGAAGATTTGAAACTGAAACTGGAGAATATGGAAGTAGCTCAAATGCAATTGTCGAGCATTGAACGTAGCCAGCGGAAGCTCTCCGAAATAAAGTT TCTCAAGCAACATGCTGTAGTGAATAATGGATCCGCGGAGGTTCAAAGACATAATCTTGCTTCACCTGGTAGTTCTTCTGCTCGTTTCTCGTGGATAAAA CGCTACACTGATGTTATTTTCAAGAATTCTCCTGAGAACACCTTGAAGAGTGAAGAGAAAGTGATTGTGGAAGTTCCCTCTATGCTTAAGGTTGGCAGGA AAAGAAGAGTAAATGACTCTTCTTTCGAAAATTCCGCTGAGCCGGAGTCCAGCAGCCATAACCCTAGTAATAAGAAACAACGGCAGCAACCAGTACTGGA AGCGGGCGTGCCGAAGGATTCCATTGCCGGCAGAATGACCTCAAATCAAGCTAGTGAGCCACTTGGTCTGCAGACAACTGAAGGAGGAGCTGAAGATACA ATTGTTGTTGACAAAATCATTAGTGTTTCTGAGGTGACAGTTGATATGATCAAGGGACAGGATTCTTCTAATAAAGAAGAGCTTCAAGATCATGCTGATG AAACTAAACTGCAGTCCGACCAGAGTATCCCTCAAGATGAAAGTCCGATTCTTTTGTCGAAGACCTCGGCTGATGATGACCAGTTGAAAAGTGTGGCGGA GAATAATGAGAAATCCCAGCCTAAAGAAGACGAGAAGGAAGAAGAATCACCATCCGAAGATAAGGAGAAAGTCGAGGAAAACATGGGGAGTAGGACAAGG TCGAAAACAGAGGCGGTCACAGCATAG
AA sequence Show only first row Show all	>Lus10019257 pacid=23141399 polypeptide=Lus10019257 locus=Lus10019257.g ID=Lus10019257.BGIv1.0 annot-version=v1.0 MASPIVPSSSGSSSRALSLTPGARVKPVSDDTTIWKRLKEAGFDDDSIQRRDKAALISYIAKLETENFDLQHHMGLVLLERKESSEKHTQLEAAAEASDL LRRREQAVHATALAEAKKREESLKKALGVGKECISSIEKTLHEMRAECAETKVAAESKLVEARNMVEEAQKKIVDAEEKLRTAESLQVEANCSKRAADRK LQEVEARERDLTRRMSEFKSDCNAREKEVDLERQHLSERRKFLQQEHERLLDGQMLLNQREDYIASKSQELSRVENELEVSRAKLEEERRHLNEEKSKLE LAMASLSQREQALAERENNSNKRERELLVMQEKLASKESAAIRKVSANHEAILRTRKSELEAELQVRRKELEDEREWKRRACELREVDLSQREDELREKE HELDAQTRGLAEKEKDVAEKISIVDEKEMRLVIAEKDIEIKTILLQKEAEEIKRIKLELQESLVSLEDKRLQVDSAKDKLETMKTETHELSDLEVRLKEE VDLVRAQKVELLAEEERLKVEKSKFEAEWELIDEKREELRKEAERVAVEREAISKLLKDERDSLRLEKETLRNQHERDIELLNSEREEFMNKMIHERSDL FNKIQKEHADFLLGIEVRKRELESSIEKRREEVECYLTDKEKAFDLEKRNEMENIHSLKEKAERELKQVALEMEKLDAKRQELLGDREQMEKEWAVLSGS IEELKSQTERLQKQRELLHAESLEVSTQIEDLQRLEDLKLKLENMEVAQMQLSSIERSQRKLSEIKFLKQHAVVNNGSAEVQRHNLASPGSSSARFSWIK RYTDVIFKNSPENTLKSEEKVIVEVPSMLKVGRKRRVNDSSFENSAEPESSSHNPSNKKQRQQPVLEAGVPKDSIAGRMTSNQASEPLGLQTTEGGAEDT IVVDKIISVSEVTVDMIKGQDSSNKEELQDHADETKLQSDQSIPQDESPILLSKTSADDDQLKSVAENNEKSQPKEDEKEEESPSEDKEKVEENMGSRTR SKTEAVTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10019257 [exp]	0	1
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	6.7	0.5962
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	16.1	0.5654
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	20.7	0.5761
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	23.6	0.5462
AT1G69550			disease resistance protein (TI...		Lus10000744 [exp]	39.2	0.5418
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	39.3	0.5554
AT3G48490			unknown protein		Lus10014788 [exp]	40.1	0.5498
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	77.2	0.5358
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10034351 [exp]	99.9	0.4994
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Lus10031083 [exp]	165.1	0.4603

Compare expression of checked genes

Lus10019257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.