Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49680 590 / 0 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT5G65780 570 / 0 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G10070 458 / 5e-161 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT1G50090 410 / 3e-142 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50110 410 / 3e-142 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G10060 407 / 5e-141 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT3G19710 357 / 1e-121 BCAT4 branched-chain aminotransferase4 (.1) AT5G27410 78 / 3e-15 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G05190 73 / 1e-13 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011567 [exp] 801 / 0 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011604 [exp] 641 / 0 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10032806 [exp] 432 / 2e-151 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007247 [exp] 432 / 4e-150 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028246 [exp] 429 / 1e-146 AT1G10070 498 / 3e-174 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028247 [exp] 404 / 1e-140 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 276 / 8e-91 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10035342 [exp] 69 / 2e-12 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10029984 [exp] 55 / 9e-08 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008000 [exp] 635 / 0 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.002G113600 [exp] 456 / 4e-160 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 422 / 1e-146 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.009G082700 [exp] 416 / 3e-144 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.005G039100 [exp] 73 / 1e-13 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10019258 pacid=23141303 polypeptide=Lus10019258 locus=Lus10019258.g ID=Lus10019258.BGIv1.0 annot-version=v1.0 ATGGAGAAAACCGCCGTACTAGGAGGTTTAAATCCGAATCATCTTCTCTCCCCATCGCGAAACGCGTCCTTGCTCCACCGCTCAGCAACGTCGTCCTTCG CCGCCGATCGCAGACTCCACGCTGCCAGTCCTTCGTTGTCCTTCAAGAAGCAGCTTCCGTCTCTTACTGCTGTGCATTCTGTGTCTCCTTTCAAGCGAGA TGCCGTCGCCTCCGATACTTACAGCACTGGAACAACCGATTTGTCTAGTATAGACTGGGACAATCTAGGGTTTGGATACATTGCTACTGATTATATGTAC ATGATGAAATGTGATCAAGAAGGGAGCTTCTCCAATGGTGAGCTCCAGCGATTTGGCAACATTGAATTGAGCCCTTCTGCAGGAGTGCTAAATTATGGCC AGGGACTATTCGAGGGTCTGAAGGCTTACAACAAAGAAGATGGAAACATCCTCTTGTTCCGTCCTGAAGAAAATGCTCGTAGAATGCAGATTGGTGCTGA GAGGATGTGTATGCCAGCTCCAACTGTAGAACAATTCGTGGAAGCTGTAAAGGAAACAGTCTTGGCGAATAAGCGTTGGATACCACCTCCTGGTAAAGGG TCTTTGTATATAAGGCCATTGCTGATGGGAAGTGGAGCTGTCCTTGGTCTTGCACCTGCTCCTGAGTACACCTTTTTGATCTATGTATCACCAGTGGGAA ACTACTTTAAGGAAGGTCTTGCACCAATTAATTTGATTATTGAGCATGAGCTACACCGGGCAACTCCTGGTGGCACTGGAGGAGTGAAAACTATTGGAAA CTATGCTGCGGTGCTCAAGGCTCAAGCTGCTGCCAAAGACAAAGGTTACTCTGATGTGCTGTATCTCGACTGTGTTCATAAGAAGTACCTGGAGGAGGTA TCATCGTGCAATATTTTTGTTGTCAAGGGAAACACAATCTCTACACCTGCAATTAAAGGGACAATCCTTCCTGGCATCACTAGAAAAAGCATAATCGATG TTGCTCGAAGCCAAGGGTTTCAGGTTGAAGAACGACTCGTCGCAGTGGATGATTTACTCACTGCCGATGAAGTATTCTGCACCGGAACAGCTGTGGTTGT ATCGCCAGTCGGAAGCATCACTTACAAGGGGAAAATGATGAAGTTTGGCGGCGGAAGTGTTGGCGCAGTCTCGCAAAAGCTCTACAGTGTGCTGACAAGT CTCCAGATGGGTCTCATAGAAGATAAGATGAACTGGACCTTGGCGCTGCATTAG
AA sequence Show only first row Show all	>Lus10019258 pacid=23141303 polypeptide=Lus10019258 locus=Lus10019258.g ID=Lus10019258.BGIv1.0 annot-version=v1.0 MEKTAVLGGLNPNHLLSPSRNASLLHRSATSSFAADRRLHAASPSLSFKKQLPSLTAVHSVSPFKRDAVASDTYSTGTTDLSSIDWDNLGFGYIATDYMY MMKCDQEGSFSNGELQRFGNIELSPSAGVLNYGQGLFEGLKAYNKEDGNILLFRPEENARRMQIGAERMCMPAPTVEQFVEAVKETVLANKRWIPPPGKG SLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGLAPINLIIEHELHRATPGGTGGVKTIGNYAAVLKAQAAAKDKGYSDVLYLDCVHKKYLEEV SSCNIFVVKGNTISTPAIKGTILPGITRKSIIDVARSQGFQVEERLVAVDDLLTADEVFCTGTAVVVSPVGSITYKGKMMKFGGGSVGAVSQKLYSVLTS LQMGLIEDKMNWTLALH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10019258 [exp]	0	1
AT3G20390			endoribonuclease L-PSP family ...		Lus10040074 [exp]	2.8	0.8648
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10011432 [exp]	14.7	0.8232
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	15.6	0.8552
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10007929 [exp]	25.3	0.8194
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10039009 [exp]	27.5	0.8387
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	30.1	0.8284
AT4G37090			unknown protein		Lus10000742 [exp]	31.6	0.8231
AT2G18220			Noc2p family (.1)		Lus10025551 [exp]	33.5	0.7920
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10018347 [exp]	34.0	0.7729
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	34.1	0.8360

Compare expression of checked genes

Lus10019258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.