Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49870 355 / 5e-127 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G67560 354 / 6e-127 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT5G37680 328 / 1e-116 ATARLA1A ADP-ribosylation factor-like A1A (.1) AT3G49860 288 / 8e-101 ATARLA1B ADP-ribosylation factor-like A1B (.1) AT2G24765 113 / 7e-32 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT2G47170 110 / 7e-31 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G10630 110 / 7e-31 ATARFA1F ADP-ribosylation factor A1F (.1) AT5G52210 110 / 1e-30 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) AT5G14670 110 / 2e-30 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G23490 109 / 2e-30 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025201 [exp] 372 / 5e-134 AT3G49870 353 / 1e-126 ADP-ribosylation factor-like A1C (.1) Lus10012090 [exp] 371 / 2e-133 AT3G49870 353 / 2e-126 ADP-ribosylation factor-like A1C (.1) Lus10011545 [exp] 258 / 1e-89 AT3G49870 243 / 9e-84 ADP-ribosylation factor-like A1C (.1) Lus10031436 [exp] 109 / 3e-30 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 109 / 4e-30 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 109 / 9e-30 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10014991 [exp] 108 / 9e-30 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10013021 [exp] 108 / 6e-29 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10013020 [exp] 108 / 3e-28 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293100 [exp] 356 / 1e-127 AT3G49870 348 / 1e-124 ADP-ribosylation factor-like A1C (.1) Potri.009G087400 [exp] 355 / 4e-127 AT3G49870 349 / 5e-125 ADP-ribosylation factor-like A1C (.1) Potri.017G130500 [exp] 327 / 6e-116 AT5G37680 355 / 6e-127 ADP-ribosylation factor-like A1A (.1) Potri.004G086200 [exp] 325 / 4e-115 AT5G37680 328 / 1e-116 ADP-ribosylation factor-like A1A (.1) Potri.006G171500 [exp] 117 / 3e-33 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 116 / 3e-33 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G096077 [exp] 116 / 4e-33 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 114 / 2e-32 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.012G138500 [exp] 113 / 2e-31 AT5G52210 348 / 7e-124 GTP-binding protein 1 (.1.2) Potri.005G142100 [exp] 112 / 2e-31 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10019259 pacid=23141389 polypeptide=Lus10019259 locus=Lus10019259.g ID=Lus10019259.BGIv1.0 annot-version=v1.0 ATGGGTTTGTGGGAAGCTCTTCTCAATTGGCTCCGCAGTCTCTTCTTCAAGCAGGAGATGGAGCTGTCCCTGATAGGACTTCAAAACGCCGGGAAGACGT CTCTTGTCAATGTTGTTGCTACTGGTGGATATAGTGAAGACATGATCCCAACGGTGGGATTCAACATGAGGAAAGTAACAAAAGGCAATGTCACCATAAA GTTGTGGGATCTTGGAGGTCAACCTAGGTTCCGCAGTATGTGGGAGCGATATTGTCGTGCAGTTTCGGCTATAGTTTACGTGGTCGATGCTGCTGATCAC GACAACTTGAGCATCTCAAGGAGTGAGCTCCATGACTTGTTGAGCAAACCATCACTTAGCGGCATCCCGTTACTAGTCCTTGGCAACAAGATCGACAAGT CAGGAGCTCTGTCCAAGCAGGCCTTGACCGATGAGATGGGTCTGAAATCGATAACTGATAGGGAAGTCTGCTGCTTCATGATCTCCTGCAAAAACTCTAC CAACATTGATTCCGTCATCGATTGGCTTGTAAAGCACTCAAAGTCGAAGAATTAA
AA sequence Show only first row Show all	>Lus10019259 pacid=23141389 polypeptide=Lus10019259 locus=Lus10019259.g ID=Lus10019259.BGIv1.0 annot-version=v1.0 MGLWEALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADH DNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKSGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	0	1
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	2.2	0.9168
AT4G37030			unknown protein		Lus10011021 [exp]	3.2	0.9090
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Lus10028629 [exp]	4.0	0.9045
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	4.7	0.8927
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10005113 [exp]	4.7	0.8729
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	5.5	0.9077
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	5.7	0.8981
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10020746 [exp]	7.5	0.8520
AT1G11740			ankyrin repeat family protein ...		Lus10020036 [exp]	8.1	0.9011
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	10.0	0.8583

Compare expression of checked genes

Lus10019259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.