Plant FIBer expression Database

Lus10019261 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G67590 203 / 6e-68 FRO1 FROSTBITE1, NADH-ubiquinone oxidoreductase-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011547
[exp]
277 / 3e-97 AT5G67590 213 / 7e-72 FROSTBITE1, NADH-ubiquinone oxidoreductase-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G117800
[exp]
212 / 1e-71 AT5G67590 198 / 4e-66 FROSTBITE1, NADH-ubiquinone oxidoreductase-related (.1)
Potri.007G005100
[exp]
211 / 3e-71 AT5G67590 214 / 3e-72 FROSTBITE1, NADH-ubiquinone oxidoreductase-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04800 ETC_C1_NDUFA4 ETC complex I subunit conserved region
Representative CDS sequence
>Lus10019261 pacid=23141343 polypeptide=Lus10019261 locus=Lus10019261.g ID=Lus10019261.BGIv1.0 annot-version=v1.0
ATGGCGGGATCCCTCCAACGAATATCAGGCGTCGGCTATGGCTCCATTCGATCAGCTCTCCCTTCGCTCTCTCGCCAGTTGTCTTCTTCAGCTTCCGATG
CCCTGGTGGAGGCGAAGCCCGGCGAGATCGGGATGGTCTCCGGTATTCCTACTGAACATCTTCGCCGGAGGGTTGTGATTTACTCCCCTGCTAGAACTGC
AACTCAACAAGGATCCGGGAAGCTCGGGAAGTGGAAAATCAACTTTGTTTCAACTCAGAAGTGGGAAAATCCATTGATGGGTTGGACGTCTACTGGTGAC
CCTTATGCCAATGTTGGAGATTCTGCACTCAGCTTTGATAGCGAAGCAGGTGCAAAGGAATTCGCTGAACGACATGGTTGGGACTATGTGATTAAGAAGC
ACCATACTCCACTCTTGAAGCCGAAGTCATACGCAGACAACTTCAAGTTCAAGGGTCTTCCAGAAAACTGA
AA sequence
>Lus10019261 pacid=23141343 polypeptide=Lus10019261 locus=Lus10019261.g ID=Lus10019261.BGIv1.0 annot-version=v1.0
MAGSLQRISGVGYGSIRSALPSLSRQLSSSASDALVEAKPGEIGMVSGIPTEHLRRRVVIYSPARTATQQGSGKLGKWKINFVSTQKWENPLMGWTSTGD
PYANVGDSALSFDSEAGAKEFAERHGWDYVIKKHHTPLLKPKSYADNFKFKGLPEN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G67590 FRO1 FROSTBITE1, NADH-ubiquinone ox... Lus10019261
[exp]
0 1
AT3G20920 translocation protein-related ... Lus10030136
[exp]
1.0 0.9385
AT5G67590 FRO1 FROSTBITE1, NADH-ubiquinone ox... Lus10011547
[exp]
1.4 0.9368
AT3G25220 FKBP15-1 FK506-binding protein 15 kD-1 ... Lus10003170
[exp]
2.2 0.9283
AT3G03100 NADH:ubiquinone oxidoreductase... Lus10030358
[exp]
2.4 0.9281
AT3G60540 Preprotein translocase Sec, Se... Lus10037570
[exp]
2.4 0.9310
AT5G20500 Glutaredoxin family protein (.... Lus10017148
[exp]
4.0 0.9289
AT4G11260 RPR1, ETA3, EDM... ENHANCER OF TIR1-1 AUXIN RESIS... Lus10039297
[exp]
5.7 0.9212
AT4G11260 RPR1, ETA3, EDM... ENHANCER OF TIR1-1 AUXIN RESIS... Lus10027540
[exp]
6.0 0.9233
AT5G16870 Peptidyl-tRNA hydrolase II (PT... Lus10009246
[exp]
6.2 0.9210
AT3G60540 Preprotein translocase Sec, Se... Lus10011428
[exp]
6.3 0.9213

Lus10019261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.