Plant FIBer expression Database

Lus10019262 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37670 798 / 0 NAGS2 N-acetyl-l-glutamate synthase 2 (.1.2)
AT2G22910 796 / 0 NAGS1 N-acetyl-l-glutamate synthase 1 (.1)
AT3G57560 57 / 1e-08 NAGK N-acetyl-l-glutamate kinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011548
[exp]
961 / 0 AT4G37670 763 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2)
Lus10012093
[exp]
913 / 0 AT2G22910 813 / 0.0 N-acetyl-l-glutamate synthase 1 (.1)
Lus10030889
[exp]
51 / 1e-06 AT3G57560 450 / 1e-159 N-acetyl-l-glutamate kinase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G005000
[exp]
887 / 0 AT4G37670 825 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2)
Potri.007G005300
[exp]
875 / 0 AT4G37670 847 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2)
Potri.018G001600
[exp]
68 / 4e-12 AT3G57560 417 / 1e-146 N-acetyl-l-glutamate kinase (.1)
Potri.006G280100
[exp]
66 / 1e-11 AT3G57560 416 / 4e-146 N-acetyl-l-glutamate kinase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF00583 Acetyltransf_1 Acetyltransferase (GNAT) family
CL0257 PF00696 AA_kinase Amino acid kinase family
Representative CDS sequence
>Lus10019262 pacid=23141361 polypeptide=Lus10019262 locus=Lus10019262.g ID=Lus10019262.BGIv1.0 annot-version=v1.0
ATGACCACTCTTACTCCGCCGCTGCATTCCGTTTCTCCACAGACCCATCTCTGCCGCCCAATTCTCAACTCATTCTTCCCGCGACGCATCGTTTCGCAGC
TTGAAGAAGCTTGGCCTTATCTCTGGGCTCATCGAGGGAGTACTTTTGTAGTTGTTATCTCTGCTGAAATTGTTACCAGCTCTTACTTGGATCCAATTCT
CAAGGATATAGCATTGCTTCATCACCTTGGAATCAGGTTCGTGATTGTTCCAGGGACTCATGTTCAAATCGACGATCTTTTGGCTGAGAGAGGGCATGAG
CCTAAGCATGCTGGTCCATATAGAATAACTGATCCAGAAGCTCTATCTGCATCAATGGAGGCGGCTGGAAAAATTCGAATGATGATAGAGGCTAAGCTTT
CTCCTGGACCTTCCATATGCAATGTGCGAAGGCATGGAGATAGTAACAGGTTGCATGACGTGGGAGTTAGTGTTGCTAGTGGCAACTTTCTTGCAGCAAA
GAGACGAGGAGTTGTTGGTGGTGTTGATTTTGGGGCGACCGGTGAAGTAAAGAAAGTAGATGTCGATCGTATGAGTGAGAGGCTTGATAGTGGTTGCATA
GTTGTGCTAAACAACTTGGGGTATTCAAGCTCCGGCGAAGTTCTGAATTGCAACACATACGAAGTTGCCACAGCTTGTGCGTTAGCAATTGGTGCAGATA
AGCTTATATGCATCATGGATGGTCCTATTCTTGACGAGAATGGGCACCTCATTCGTTTCTTAACTCTTGAAGAAGCAGACACATTGATTCGCGAGCGGGC
TAAGCAAAGTGAGGTAGCTGCTCATTATGTCAAGGTGGTTGCAGAAGAAGACCCCGCTTTTGTCGAAGACACCGATTCTATCTCATTAGTTGCCAAAGAT
AATGCGACATTTCACAATGGAGTTGGTTTTGGCAACGGCAGTGGTCTGTGGTCAGGAGAACAAGGTTTTGCAATTGGTGGACAGGAAAGACTTAGCCGAT
CACATGGATATCTTTCGGAATTGGCTGCTGCGGCTTTTGTTTGCAAGGGTGGTGTGCAAAGAGTACATCTATTAGACGGTACTATCGGTGGGGTTTTGCT
GTTAGAACTCTTTAAAAGAGATGGAATGGGAACCATGGTGGCTAGCGACCTATACGAAGGAACCCGTATGGCTAGGGTGTCGGATCTTGCCGGAATAAAA
CAGATTATACAGCCTTTACAAGAAGCAGGCGTGTTGGTGAAGAGGACCGATGAAGAGTTGCTTAAAACATTGGGTTCATACATTGTGGTGGAAAGAGAAG
GTCAAATCATTGCTTGCACTGCACTCTTCCCTTTCTTTGAAGACAAGTGTGGAGAGGTTGCTGCAATTGCAGTTTCTTCAGATTGCCGTGGACAAGGCCA
AGGAGACAAATTGTTAGATTATATCGAGAAGAAATCGTCTTCACTGGGATTGGAAATGTTGTTCCTTCTTACTACTCGTACCGCGGACTGGTTTACAAGG
CGCGGGTTCTCGGAGTGTTCAATTGAGATGATACCAGAAGAGAGGAGGAAGAAGATCAATCTGTCGCGGAACTCGAAATACTATATGAAGAGATTGCTTC
CTGATACAAGTGGGATTACTCTAACTGCCAAGCAGTGTCACTGGCAATAG
AA sequence
>Lus10019262 pacid=23141361 polypeptide=Lus10019262 locus=Lus10019262.g ID=Lus10019262.BGIv1.0 annot-version=v1.0
MTTLTPPLHSVSPQTHLCRPILNSFFPRRIVSQLEEAWPYLWAHRGSTFVVVISAEIVTSSYLDPILKDIALLHHLGIRFVIVPGTHVQIDDLLAERGHE
PKHAGPYRITDPEALSASMEAAGKIRMMIEAKLSPGPSICNVRRHGDSNRLHDVGVSVASGNFLAAKRRGVVGGVDFGATGEVKKVDVDRMSERLDSGCI
VVLNNLGYSSSGEVLNCNTYEVATACALAIGADKLICIMDGPILDENGHLIRFLTLEEADTLIRERAKQSEVAAHYVKVVAEEDPAFVEDTDSISLVAKD
NATFHNGVGFGNGSGLWSGEQGFAIGGQERLSRSHGYLSELAAAAFVCKGGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRMARVSDLAGIK
QIIQPLQEAGVLVKRTDEELLKTLGSYIVVEREGQIIACTALFPFFEDKCGEVAAIAVSSDCRGQGQGDKLLDYIEKKSSSLGLEMLFLLTTRTADWFTR
RGFSECSIEMIPEERRKKINLSRNSKYYMKRLLPDTSGITLTAKQCHWQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37670 NAGS2 N-acetyl-l-glutamate synthase ... Lus10019262
[exp]
0 1
AT1G55850 ATCSLE1 cellulose synthase like E1 (.1... Lus10016625
[exp]
3.7 0.9430
AT4G27290 S-locus lectin protein kinase ... Lus10014811
[exp]
4.0 0.9462
AT3G16910 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-... Lus10016870
[exp]
4.2 0.9420
AT1G01490 Heavy metal transport/detoxifi... Lus10036395
[exp]
5.5 0.9277
AT1G11340 S-locus lectin protein kinase ... Lus10007604
[exp]
6.5 0.9280
AT1G07570 APK1A Protein kinase superfamily pro... Lus10002697
[exp]
6.9 0.9405
AT4G25030 unknown protein Lus10041414
[exp]
8.4 0.9169
AT2G14440 Leucine-rich repeat protein ki... Lus10041860
[exp]
10.0 0.9389
AT3G05660 AtRLP33 receptor like protein 33 (.1) Lus10002214
[exp]
10.2 0.9353
AT5G05340 Peroxidase superfamily protein... Lus10029062
[exp]
11.2 0.9371

Lus10019262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.