Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67610 419 / 7e-143 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) AT3G49840 350 / 3e-116 Uncharacterized conserved protein (DUF2215) (.1) AT1G28760 227 / 1e-68 Uncharacterized conserved protein (DUF2215) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011548 [exp] 822 / 0 AT4G37670 763 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Lus10034420 [exp] 239 / 3e-73 AT1G28760 413 / 8e-141 Uncharacterized conserved protein (DUF2215) (.1) Lus10019140 [exp] 156 / 4e-42 AT5G67610 320 / 6e-105 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G005500 [exp] 563 / 0 AT5G67610 400 / 1e-135 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Potri.013G064800 [exp] 258 / 3e-80 AT1G28760 416 / 2e-141 Uncharacterized conserved protein (DUF2215) (.1) Potri.019G039300 [exp] 213 / 2e-64 AT1G28760 320 / 1e-106 Uncharacterized conserved protein (DUF2215) (.1) Potri.014G003451 [exp] 59 / 2e-10 ND / Potri.019G039401 [exp] 49 / 3e-07 AT1G28760 44 / 2e-06 Uncharacterized conserved protein (DUF2215) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10225 [flax] [poplar] NEMP NEMP family
Representative CDS sequence Show only first row Show all	>Lus10019263 pacid=23141331 polypeptide=Lus10019263 locus=Lus10019263.g ID=Lus10019263.BGIv1.0 annot-version=v1.0 ATGGGTTTTGCGAAACCCGCTCGGAGCTCCGTTTGCTTCTTCTGGGTTCTCTTGCTTTGCTCTTTCCCGTTCTTCGCTTCCTTCGCTACCGCCACTGCAT TAGTTATTGGTGAGAGTTCTAGACTCAATGTGACTCCTAGCTTGCCTGTGGTGAACTCCCCTGGGACGAAGCCTGGAACTAGGCTGCTTTGTGATAGAAT TCGTATTGATGGATTACCTAGGCTAAAGAACTTGAAGAAGTTTTCACACTCGTTGAAGTTGAACCTTACGCATTCTAGCTCGACTCTCCGTGGCCCAAGT GTTGAAGTTTGTTTCCACAAGAATTCATCTGTTGGAGTTGGGATGTGTTCTCAAGGAAGGTGGGAGAAAGTTGTTAAGGGCACATGGGGTCGTGCTATGT CACCTTTTGATCATAAGCTCCTGGATATAAGGATGTCTGGTTCATCCCCTGAAAACTTTGAACTTCACATTGAAGAAGAATTTTTCTTGTATCGGATCGT ATTCCTAGTAGTTGGGATCTTTATGTTGAGCGTGGCATCCCCTTTGAGCGAGTCGTTAACGTTTTACTACAGCAGTGGCATGGCACTTGGCATCATCCTT GTAATATTGGTGGTTCTTTTTCAGGGGATGAAAATTTTGCCAACTGGTCGGAGGAATGCACTTGCGATTGTCATATACTCATCTTTGGTTGGTTTGGGAT CTTTTCTCCTGCAATACGTGCCAGGCTTATTTCAGTCACTGCTCCTTGAGATGGGAATCAGTGAAGACATGTATTTTCCTTTGGCAGTTTTTCTGGTGGC TTTTATTGTTCTCGCTGGAGCGTGGATGGGTTTCTGGGCTGTGCGGAAACTTGTCTTGGCAGAAGATGGATCAGTTGACACTAGTACTTCCATTTTTGTT GCCTGGTCTATCAGGATTGTGGCTGGTATTATGATTCTTCAGAGCTCATTGGATCCGCTGCTAGGAGCAGGGGCATTACTATCAGGAACTATTCTCTCAT CAATGTTGAGGAGAACTTTCCGATTGAAATTTTGGTGGCGGCTCTACAAGGGGTTGCTCAATTTGGTGGACAACATTAGCTCGGAGTCTGACGTTCCTGA TCTATCTCCGTTCCAGAATTCGCATGAACAGTACATATACAGAACTCCTGAAGATTCTCAGCCTCTCTGGCCCCGGCCTAAGAGGTTTAGTGCTCCTATT CAAGATAATAAAACGATTTCAGCTGAACAATCATCAGATTCAGGTGTGTTCATTTCAACCTTCTGCACTCCAGAGAAGACGACGAAATTCTCCAAGGAAG AGTGGAAAAGGTTCACCGAAGACTCAACACAGAAGGCGGTGAAAGAACTCGTCGGTTCCCCCGATTTCAGCAGATGGGTTGCTGCAAACGCTGATCGAAT CTCTGTGACTCCAAAGTCCTCGCGGAGGGAGGCTCCTCCGCGTCGGAAGTGGCTCTACTTCTTCTGA
AA sequence Show only first row Show all	>Lus10019263 pacid=23141331 polypeptide=Lus10019263 locus=Lus10019263.g ID=Lus10019263.BGIv1.0 annot-version=v1.0 MGFAKPARSSVCFFWVLLLCSFPFFASFATATALVIGESSRLNVTPSLPVVNSPGTKPGTRLLCDRIRIDGLPRLKNLKKFSHSLKLNLTHSSSTLRGPS VEVCFHKNSSVGVGMCSQGRWEKVVKGTWGRAMSPFDHKLLDIRMSGSSPENFELHIEEEFFLYRIVFLVVGIFMLSVASPLSESLTFYYSSGMALGIIL VILVVLFQGMKILPTGRRNALAIVIYSSLVGLGSFLLQYVPGLFQSLLLEMGISEDMYFPLAVFLVAFIVLAGAWMGFWAVRKLVLAEDGSVDTSTSIFV AWSIRIVAGIMILQSSLDPLLGAGALLSGTILSSMLRRTFRLKFWWRLYKGLLNLVDNISSESDVPDLSPFQNSHEQYIYRTPEDSQPLWPRPKRFSAPI QDNKTISAEQSSDSGVFISTFCTPEKTTKFSKEEWKRFTEDSTQKAVKELVGSPDFSRWVAANADRISVTPKSSRREAPPRRKWLYFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	0	1
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	2.4	0.9314
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Lus10014835 [exp]	2.8	0.9075
AT3G10310			P-loop nucleoside triphosphate...		Lus10031058 [exp]	3.2	0.9068
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	5.3	0.8990
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	8.4	0.9157
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	9.3	0.9081
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	10.0	0.8806
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	15.5	0.8695
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	15.7	0.9014
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	18.6	0.8754

Compare expression of checked genes

Lus10019263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.