Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67620 152 / 5e-47 unknown protein AT5G62900 96 / 7e-25 unknown protein AT1G10530 83 / 5e-20 unknown protein AT1G60010 78 / 4e-18 unknown protein AT5G50090 77 / 5e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011549 [exp] 199 / 3e-60 AT5G67620 90 / 1e-20 unknown protein Lus10029193 [exp] 100 / 2e-26 AT1G60010 178 / 1e-57 unknown protein Lus10043461 [exp] 98 / 2e-25 AT5G50090 146 / 7e-45 unknown protein Lus10034124 [exp] 98 / 2e-25 AT5G50090 147 / 3e-45 unknown protein Lus10010708 [exp] 98 / 2e-25 AT1G60010 177 / 3e-57 unknown protein Lus10030651 [exp] 93 / 6e-24 AT1G60010 171 / 4e-55 unknown protein Lus10004229 [exp] 91 / 7e-23 AT5G50090 150 / 1e-46 unknown protein Lus10042139 [exp] 88 / 1e-21 AT5G50090 141 / 4e-43 unknown protein Lus10030835 [exp] 86 / 3e-21 AT1G60010 150 / 2e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G005600 [exp] 164 / 2e-51 AT5G67620 184 / 7e-60 unknown protein Potri.012G077300 [exp] 100 / 1e-26 AT5G50090 168 / 1e-53 unknown protein Potri.015G072501 [exp] 99 / 7e-26 AT5G50090 152 / 4e-47 unknown protein Potri.008G146500 [exp] 91 / 2e-22 AT1G60010 189 / 3e-61 unknown protein Potri.010G095400 [exp] 84 / 3e-20 AT1G60010 187 / 5e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019264 pacid=23141292 polypeptide=Lus10019264 locus=Lus10019264.g ID=Lus10019264.BGIv1.0 annot-version=v1.0 ATGGGGAACTGTCAAGCGGCGGAGGCGGCGACGGTGGTGATCCAACACCCGCCGCCGGTGGGAAACAACACCAACACCAAAAGGGTCGACAGGATTTACT GGTCGGTCAGAGCCCACGAGGTCATGAACTCCAACCCCGGCCATTACGTTGCTCTAGTGGTGAATCCACCTTCGATGGAGAACGGGCAGACTCCGGCGGC GAAGCAGGTGCTGAAGCTTTTGAAACCCGACGACACCCTTCTCATCGGTCAGGTCTACCGTCTCATCAGCTTCGAAGATGTGCTGAAGGAGTTTGCTACC AAGAAGAGCGTGAAACTGGGGAAGCTTATGAAAGAGAGAGGCGGCGGAACGACGACGGCGGCGGTAAGAGGAGGAGGAGGAATGGAGTCGGAGATCAAGA GGAGGAACAACTCCGGCGAGGATTGGAGTAGCTCTGCTGCTGATACGGAGGAGGCTAACCAACAACTGCAACTGGGAATCACCACCACCAGCAGCTTTAA TGGAGGAGGAGGAAGTAGCGGCAGAGTGGTTCGAAGACAGCATTATTATAACTATGGAGGAGGGCAATGGAGGCCAGCGTTGCAGAGCATTTCAGAGATC GCTTGA
AA sequence Show only first row Show all	>Lus10019264 pacid=23141292 polypeptide=Lus10019264 locus=Lus10019264.g ID=Lus10019264.BGIv1.0 annot-version=v1.0 MGNCQAAEAATVVIQHPPPVGNNTNTKRVDRIYWSVRAHEVMNSNPGHYVALVVNPPSMENGQTPAAKQVLKLLKPDDTLLIGQVYRLISFEDVLKEFAT KKSVKLGKLMKERGGGTTTAAVRGGGGMESEIKRRNNSGEDWSSSAADTEEANQQLQLGITTTSSFNGGGGSSGRVVRRQHYYNYGGGQWRPALQSISEI A

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67620			unknown protein		Lus10019264 [exp]	0	1
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10036516 [exp]	8.8	0.9146
					Lus10033479 [exp]	9.4	0.9076
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	11.5	0.9347
AT1G47790			F-box and associated interacti...		Lus10031533 [exp]	13.6	0.9291
AT5G51740			Peptidase family M48 family pr...		Lus10031682 [exp]	13.7	0.8904
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	15.3	0.8981
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028557 [exp]	17.5	0.8856
					Lus10037567 [exp]	17.7	0.9273
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	19.5	0.9207
					Lus10015244 [exp]	21.1	0.9156

Compare expression of checked genes

Lus10019264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.