Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22900 534 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 518 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT5G07720 318 / 8e-105 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G74380 314 / 6e-103 XXT5 xyloglucan xylosyltransferase 5 (.1) AT1G18690 306 / 2e-99 Galactosyl transferase GMA12/MNN10 family protein (.1) AT3G62720 305 / 2e-99 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G02500 299 / 4e-97 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT4G38310 158 / 4e-47 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011550 [exp] 838 / 0 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 317 / 1e-104 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10019076 [exp] 317 / 2e-104 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 315 / 6e-103 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 315 / 7e-103 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037519 [exp] 301 / 4e-98 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 301 / 4e-98 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 300 / 3e-97 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 266 / 6e-85 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006100 [exp] 662 / 0 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 649 / 0 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.015G061800 [exp] 315 / 2e-103 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 312 / 2e-102 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.008G208000 [exp] 305 / 2e-99 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 301 / 5e-98 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 300 / 6e-98 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10019265 pacid=23141371 polypeptide=Lus10019265 locus=Lus10019265.g ID=Lus10019265.BGIv1.0 annot-version=v1.0 ATGGCGAAATCCTCCACCTCCTCCGCTTCAGCCAGAAACAAGCAGTCTAACGACGGCTGCCTCTACATCGGAGGAGCCCTCTTCGCCTTCTTGCTCTTCT GGTGCCTCTGGTCCTACGCCGGCCCTTCCGGAGACGAAGCCGGATCCAATTTCATCCCCAGGGTTTTCAGCGATATCGGATCCGACCACTGCTCCAACCC GGCTCCTAACCTCCGTTTCGACCCGCCCGACACTACTTTCTACGACGACCCAGAGATCCGGTATTCAATCGACAAGGTCACCGGATGGGATGAGAAGCGG AAGGAATGGCTGAAGCGGCATCCGACGTTCGCGGCGGGGAGTAAACGCCGCGTTGTGATGGTCACTGGTTCTCAGCCGAAGCCGTGCCGGAATCCGATTG GCGACCATCTCCTCCTCCGCGCGTTTAAGAATAAGGTGGATTACTGCCGGATCCATGGCTATGATATCTTTTACAACAACGTGCTTCTTCATCCGAAGAT GCCGAGCTTCTGGGCGAAGCTTCCTGTGGTGAAGGCGGCGATGGTTGCTCATCCGGAAGCCGAGTGGATCTGGTGGGTTGACTCGGACGCGTTGATCACC GACATGGAATTTAAGCTTCCGCTGGATCGTTACGATTACAAATCTCATAATCTGGTAGTCCATGGATGGGAGAAGCTGATCTACAAGGAGAAATCGTGGA CGTCGTTGAACGCCGGAGTGTTTCTGATTCGTAACTGCCAGTGGTCGATGGATTTCATCGACGTTTGGGCCAATATGGGTCCGAAGAGTCCGGATTTCAA AAAATGGGGAGAGATCCAACGGTCGTTGTTCAAGGACAAGCTATTCCCGGAATCCGACGATCAGTCGGCGTTGATCTACTTACTCCTGAGAGAAAAGAAA TTGATGGATAAGATCTACTTGGAAGGAGCTTTCTACTTCGAAGGGTACTGGGTGGAGATTGTGCCGACGTACGACAACATAACGGAGAAGTACACGGCGA TCGAGAGGGAAGATGGGAAGCTACGCCGGCGGCACGCGGAGAAAGTTAGTGAACAGTATGCTGCGTTTCGGGAGCCGTACCTGAAGGAAGCCGGAGGAGG GCGGTGGAGCTGGCGGCGGCCGTTTATAACGCATTTCACCGGGTGTCAGCCGTGTAGCGGCGATCACAACCAGATTTACGCCGGCGAGAGCTGCTGGAAC GGGATGGTGAAGGCTTTGAATTTTGCGGATAATCAGGTGTTGAGGAAGTATGGGTTTGTTCATCCGGATTTGCTTGATTCCGCGACGGTGACGGAGACAG CGTTTGATTTCCCCGACGAGGGACCTTGGTGA
AA sequence Show only first row Show all	>Lus10019265 pacid=23141371 polypeptide=Lus10019265 locus=Lus10019265.g ID=Lus10019265.BGIv1.0 annot-version=v1.0 MAKSSTSSASARNKQSNDGCLYIGGALFAFLLFWCLWSYAGPSGDEAGSNFIPRVFSDIGSDHCSNPAPNLRFDPPDTTFYDDPEIRYSIDKVTGWDEKR KEWLKRHPTFAAGSKRRVVMVTGSQPKPCRNPIGDHLLLRAFKNKVDYCRIHGYDIFYNNVLLHPKMPSFWAKLPVVKAAMVAHPEAEWIWWVDSDALIT DMEFKLPLDRYDYKSHNLVVHGWEKLIYKEKSWTSLNAGVFLIRNCQWSMDFIDVWANMGPKSPDFKKWGEIQRSLFKDKLFPESDDQSALIYLLLREKK LMDKIYLEGAFYFEGYWVEIVPTYDNITEKYTAIEREDGKLRRRHAEKVSEQYAAFREPYLKEAGGGRWSWRRPFITHFTGCQPCSGDHNQIYAGESCWN GMVKALNFADNQVLRKYGFVHPDLLDSATVTETAFDFPDEGPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	0	1
AT3G06150			unknown protein		Lus10034027 [exp]	1.7	0.8697
AT4G39840			unknown protein		Lus10024058 [exp]	2.0	0.8607
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	2.4	0.8497
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	4.0	0.8303
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	4.9	0.8473
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	5.0	0.8452
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	8.1	0.8411
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	9.5	0.8277
AT2G34510			Protein of unknown function, D...		Lus10023314 [exp]	10.5	0.8188
AT3G57400			unknown protein		Lus10042066 [exp]	10.6	0.8157

Compare expression of checked genes

Lus10019265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.