Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011549 [exp] 426 / 1e-146 AT5G67620 90 / 1e-20 unknown protein Lus10030905 [exp] 125 / 3e-32 ND 40 / 0.005 Lus10030519 [exp] 51 / 2e-07 ND / Lus10012867 [exp] 45 / 9e-05 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019266 pacid=23141324 polypeptide=Lus10019266 locus=Lus10019266.g ID=Lus10019266.BGIv1.0 annot-version=v1.0 ATGGTCGGAGACTTCCTCTACAATCGGACGCCGTTATCCGCTCTAAGGATCTCGCTGGTAGGGAGTCCCGCACATGACCAGCTCGACGAGCTACTGATTG GTTCCGTAGGGGGGCTGCTAGCAGTAAGTTGGGGTTCGCCTCTCGAGATCTCGATCCAGATCACCGGCAGCCGCCGCGGCTACAATCTTCCCCGAGCGGT GTTCCGGAATTGCAGGCGCACAACGGTCCTTAGTCTTAGAGGCTTCAACTGGCAGGATGCAGATGCCGATTACGTTAACTTTCTGCTTCACTCTGGCCTT GGCCGAGGACCAATCCAGCTTACTGCTGTTCCACTCATGTTGAAGAATCTGGAACTAAGAGGTGCCATTAAGCTCAAGGCTGAAGCTACAAACCTCAAAT CGGTAGCATTTCATAACAACGGCCAGGTAACACAGCAGGAACTTGATGAGTTTACTTCCCTTTTGCCAGCTCTCGAGTCTCTTTCGTTCCGGAACTTGGA TTTTGAAAGTGAGGAGTTCAGGCTGAAGATATCTTCCCCTCAGGCCAAAATTCGTAAGTTCAGCTTAACAAATTGCCATTCACGCCGAGGTAGGAAGCCG CTGGAGGAGATAGTAATTGATGCTCCTGAACTGGCTACTTTCGTCTACGTTTGTGGTGGTAGCTTCAGTCCACCGGTTCCCAATGTTAACGTCGTCAATG TCGCTTCTGATTTTCGGTTCGATGTGGTTGCGGACGGGATCGACTGTTACACAGGCTTCACGTATGAATGGTATGCTGAGTTGAGGCTGTTCCTCGAAAG ACTTAGAAGCCAATTCCATGGCAACCTGGTTCTGAAGATCCAGGGGCTGGAGGAGTATTTCTCATGCCTTGGTGAGGTATGA
AA sequence Show only first row Show all	>Lus10019266 pacid=23141324 polypeptide=Lus10019266 locus=Lus10019266.g ID=Lus10019266.BGIv1.0 annot-version=v1.0 MVGDFLYNRTPLSALRISLVGSPAHDQLDELLIGSVGGLLAVSWGSPLEISIQITGSRRGYNLPRAVFRNCRRTTVLSLRGFNWQDADADYVNFLLHSGL GRGPIQLTAVPLMLKNLELRGAIKLKAEATNLKSVAFHNNGQVTQQELDEFTSLLPALESLSFRNLDFESEEFRLKISSPQAKIRKFSLTNCHSRRGRKP LEEIVIDAPELATFVYVCGGSFSPPVPNVNVVNVASDFRFDVVADGIDCYTGFTYEWYAELRLFLERLRSQFHGNLVLKIQGLEEYFSCLGEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019266 [exp]	0	1
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10041360 [exp]	3.7	0.6975
AT3G44670			Disease resistance protein (TI...		Lus10023273 [exp]	5.8	0.6483
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	5.8	0.7667
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	7.7	0.7782
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	11.8	0.7278
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	13.4	0.7553
AT5G27260			unknown protein		Lus10035759 [exp]	16.1	0.6977
AT2G36670			Eukaryotic aspartyl protease f...		Lus10014391 [exp]	20.8	0.6493
AT1G48170			unknown protein		Lus10022781 [exp]	24.0	0.6856
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	27.4	0.6943

Compare expression of checked genes

Lus10019266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.