Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67630 731 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G49830 654 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22330 313 / 2e-102 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011551 [exp] 828 / 0 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011283 [exp] 291 / 4e-91 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040479 [exp] 279 / 1e-88 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096800 [exp] 780 / 0 AT5G67630 764 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G118900 [exp] 764 / 0 AT5G67630 758 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G160600 [exp] 309 / 8e-101 AT5G22330 812 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G199100 [exp] 309 / 8e-101 AT5G22330 788 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06068 [flax] [poplar] TIP49 TIP49 P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10019267 pacid=23141394 polypeptide=Lus10019267 locus=Lus10019267.g ID=Lus10019267.BGIv1.0 annot-version=v1.0 ATGGCGGAGCTCAGAATCTCTTCCGAAACCCGGGACCTAACCCGGATAGAACGGATAGGTGCTCACTCCCACATCCGTGGCCTCGGCCTCGACTCAGCCC TCGAGCCCCGCGCCGTATCCGAAGGCATGGTAGGCCAAACCTCCGCCCGGAAAGCCGCCGGTGTCATCCTCCAGATGATTAAGGACGGTAAAATCGCTGG ACGAGCAGTACTAATCGCCGGCCAACCAGGTACCGGAAAGACAGCAATCGCTATGGGGATGGCGAAATCCCTAGGTCTGGAAACACCATTCGCCATGATT TCAGGTAGCGAGATCTTCTCGTTGGAGATGTCCAAGACTGAGGCACTGATGCAGTCGCTGAGGAAGGCTATCGGGGTGAGAATCAAGGAAGAGACGGAGA TAATCGAAGGGGAAGTGGTTGAGGTTCAGATCGACAGGCCGGCGGTGGCTGGCGCGGCGTCGAAGACGGGGAAGTTGACGCTGAAGACGACGGAGATGGA GACTGTTTATGAGCTTGGGGCGAAGATGATTGAGGCCTTGGGGAAGGAGAAAGTGCAGAGTGGGGATGTTGTAGCCATTGATAAGGCTTCTGGTAAGATT ACCAAGCTTGGGAGGTCTTTCTCGAGGTCTAGGGACTATGATGCTATGGGGCCTCAGGTGAAGTTCGTGCAGTGTCCTGATGGTGAGCTTCAGAAGAGGA AAGAGGTCGTGCATTGTGTTACTCTCCATGAGATTGATGTCATCAATAGCAGAACACAGGGATTTCTGGCTTTGTTCACTGGCGATACCGGCGAAATCCG TGCTGAAGTTAGAGAGCAGATCGACACAAAGGTAGCGGAATGGAGGGAAGAAGGGAAAGCAGAGATAGTCCCCGGTGTCCTGTTCATAGACGAAGTCCAC ATGCTCGACATCGAGTGCTTCTCTTTCCTCAACCGTGCACTCGAGAACGAGATGTCTCCTATCCTAGTTGTGGCCACCAACCGAGGAATCACAACGATCC GCGGCACGAGCTACAAATCCCCCCACGGAATCCCCATCGATTTGCTCGACCGGTTGCTCATCATCGCGACTCAACCCTACACGAAGGACGAAATCAGGCA GATACTCGACATCAGAGCCCAAGAAGAAGAAGTGGAGATGGCCGAGGAGGCGAAGGCTCTACTCACCCATATCGGAGTGGAGACTTCGTTGAGGTACGCC ATCCACCTCATCACTTCGGCGGCCCTGGCTTGCCAGAAGCGGAAAGGGAAGCTCGTCGAGAGCGAGGATGTCACCCGAGTTTACAATCTTTTCCTCGACG TGAAGAGATCCGCTCAGTACTTGATGGAGTATCAGAACGAGTACATGTTCAACGAAGCACCCATTGCAGATGCTGAAGATGATGATGCTACTGCCATGGT CCCTTGA
AA sequence Show only first row Show all	>Lus10019267 pacid=23141394 polypeptide=Lus10019267 locus=Lus10019267.g ID=Lus10019267.BGIv1.0 annot-version=v1.0 MAELRISSETRDLTRIERIGAHSHIRGLGLDSALEPRAVSEGMVGQTSARKAAGVILQMIKDGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMI SGSEIFSLEMSKTEALMQSLRKAIGVRIKEETEIIEGEVVEVQIDRPAVAGAASKTGKLTLKTTEMETVYELGAKMIEALGKEKVQSGDVVAIDKASGKI TKLGRSFSRSRDYDAMGPQVKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAEIVPGVLFIDEVH MLDIECFSFLNRALENEMSPILVVATNRGITTIRGTSYKSPHGIPIDLLDRLLIIATQPYTKDEIRQILDIRAQEEEVEMAEEAKALLTHIGVETSLRYA IHLITSAALACQKRKGKLVESEDVTRVYNLFLDVKRSAQYLMEYQNEYMFNEAPIADAEDDDATAMVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67630			P-loop containing nucleoside t...		Lus10019267 [exp]	0	1
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	1.0	0.9494
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	4.0	0.9112
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10022876 [exp]	5.3	0.9039
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	7.3	0.9103
AT4G34880			Amidase family protein (.1)		Lus10027853 [exp]	9.2	0.8649
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	9.4	0.8766
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	10.7	0.8880
AT5G60670			Ribosomal protein L11 family p...		Lus10037402 [exp]	11.0	0.8875
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	13.4	0.8733
AT1G02870			unknown protein		Lus10001459 [exp]	14.4	0.8452

Compare expression of checked genes

Lus10019267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.