Plant FIBer expression Database

Lus10019268 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G67640 57 / 1e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011552
[exp]
120 / 4e-34 AT5G67640 52 / 2e-09 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G006000
[exp]
90 / 2e-21 AT5G67640 / unknown protein
PFAM info
Representative CDS sequence
>Lus10019268 pacid=23141374 polypeptide=Lus10019268 locus=Lus10019268.g ID=Lus10019268.BGIv1.0 annot-version=v1.0
ATGGCAGCGCAAAACCCCCGGCGGAAGATCCGAAGACCGGCCGTCAGGTTCCTGACGGCGGGCAGGGACTTGTACATAGCCAGGATGTCTGCATTATCCG
ACAAGGTCCAATCCCATGCCATCCAACCCTGCTCTGTTCCAGGACTCTATAGCTTTTGTTGCTCGAGGGAAGATCGGATGGGGCTCATCGTAAGGGAGGG
TACTCACTATCATGGTGGCGGTTCGATCGGAGGAGGAGTGCTTTGTCAGGATGTGATTCAGAAAGGTTGTGGGAAGAAGTATCCTGTCAGGAAATTGACC
AGGAGGCTTCAGAGGGTGAGTGTTGAGGAAGAGGAGAGATTGTTGGACTCTGCGGGGCCACAAGGCCTTCAAAGCACGTCAGAAGTCAGAATGCGGCGTG
CAGAGAAGCGGAAGAAATTCCACGACGCACTCCTCAAATCCCTTTACCCCCAATCCCCAGAACCCAATGTTGATACCGGCGACGACGAACTTCCGGCATC
CACGCCGGCAGAAGAATTCGACGTGAATCTGATTCCAGATGATTACGGCTTGCAGATGAGCGGCCCGTCGTCCTCGACGAGCGACACGGATGGAGGCAGC
CGTAAGTTGAGTAGGGCTCAAAGGAAGAGGCTGAGGAAGAAGAAGATTAAGGAAGATGCTTGCCGTCGGAAGGGGATCATTGGGCCGTTGCTACCTCCAA
CAGCTGATGGAGAACCAGAGTGCAGTCCAGGTGTTCGACAAAATGCCGACGAGAGTGGCCAAGGCAGCAATGATGCAGGTGTTGGTGCGAGCAGGATGAA
CCAGCGGAGGAAGGCAAAGAAGCTGGCCAAGGAGAAGCTGAAACCAGACTTGATCAAGGTGTCGGCTGATGATGAGAAATGTTAA
AA sequence
>Lus10019268 pacid=23141374 polypeptide=Lus10019268 locus=Lus10019268.g ID=Lus10019268.BGIv1.0 annot-version=v1.0
MAAQNPRRKIRRPAVRFLTAGRDLYIARMSALSDKVQSHAIQPCSVPGLYSFCCSREDRMGLIVREGTHYHGGGSIGGGVLCQDVIQKGCGKKYPVRKLT
RRLQRVSVEEEERLLDSAGPQGLQSTSEVRMRRAEKRKKFHDALLKSLYPQSPEPNVDTGDDELPASTPAEEFDVNLIPDDYGLQMSGPSSSTSDTDGGS
RKLSRAQRKRLRKKKIKEDACRRKGIIGPLLPPTADGEPECSPGVRQNADESGQGSNDAGVGASRMNQRRKAKKLAKEKLKPDLIKVSADDEKC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G67640 unknown protein Lus10019268
[exp]
0 1
AT1G20693 HMGBETA1, NFD2,... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10016695
[exp]
17.1 0.7542
AT4G10650 P-loop containing nucleoside t... Lus10014654
[exp]
82.2 0.6243
AT5G64630 MUB3.9, NFB1, N... FASCIATA 2, Transducin/WD40 re... Lus10000155
[exp]
127.2 0.6526
AT4G29510 ATPRMT1B, ATPRM... PROTEIN ARGININE METHYLTRANSFE... Lus10008577
[exp]
164.8 0.6461
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Lus10020992
[exp]
198.1 0.6225
AT5G14070 ROXY2 Thioredoxin superfamily protei... Lus10038514
[exp]
215.1 0.6356
AT1G61670 Lung seven transmembrane recep... Lus10012872
[exp]
215.6 0.6102
AT2G19385 zinc ion binding (.1) Lus10027626
[exp]
221.2 0.6324

Lus10019268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.