Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03280 441 / 5e-152 Transcription factor TFIIE, alpha subunit (.1) AT4G20340 369 / 9e-124 Transcription factor TFIIE, alpha subunit (.1) AT4G20810 327 / 3e-108 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011554 [exp] 749 / 0 AT1G03280 505 / 2e-177 Transcription factor TFIIE, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G051000 [exp] 556 / 0 AT1G03280 498 / 1e-174 Transcription factor TFIIE, alpha subunit (.1) Potri.010G102000 [exp] 467 / 4e-162 AT1G03280 484 / 7e-169 Transcription factor TFIIE, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02002 [flax] [poplar] TFIIE_alpha TFIIE alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10019269 pacid=23141420 polypeptide=Lus10019269 locus=Lus10019269.g ID=Lus10019269.BGIv1.0 annot-version=v1.0 ATGATGAGCCTTGAACCTTGGAACAGGCTAGTGAAGCTTGCTGCTAGGGCATTTTATGATGACTACACGACAAAAGGAGAAAATCAGCCGAAGATTGCAC GTAGTGATAATAGAGGAATGGCTGTCGTGATCCTTGATGCTCTAACTAGACGTCAGTGGGTTCGAGAAGAGGATTTGGCCAAGGATTTGAAAATGCATAC AAAGCAAATTAGGCGTACTCTGCGTTTCTTTGAAGAAGAAAAGTTGGTCACCCGTGATCAGAGAAAGGAGACAGCCAAAGGTGCAAAGCAATATAGTGCT GCAGTAGCTGCTACTACTGAAGTTCAAAATGGGAAGGAAGGGGAGGATAAGGTTAAGCTGCTCCTTCACTCATATTGTTGCCTGGATTATGCACAGATAT ATGATGTTGTTCGTTACAGATTGCATCGTTTGAAGAAGAAGCTGAGGGAGGAGTTGGAAGAAAAAAACACAATTCAGGAGTATGTGTGCCCCAACTGCGG AAAAAGATACAATGCCCTAGACGCACTGCAGCTGGTCTCCATGGTGGATGAATATTTCCATTGTGAGAATTGCAACGGGGAGCTTGTGGCAGAGAATGAC AAGTTAAGCGTTGCCGATGGAGATACGGATGACAATGCAAGGAGGAGACGGCGTGAAAAGCTGAAAGACTTGCTACAGAAAATGGAGACACAGCTTAAGC CTCTGACAGAGCAGCTAAACAGAGTGAAGGACTTGCAAGTTCCCGATTTTGGAAATCTCCTCGCTTGGGAAGCTCGAGCAATTGCTGCTGGACGTGACTT AAATGGTTCTAATTCCAATGATCCTTCAAAGGCAACTCAGGGATATGGAGCACCACTACCATATCTTGGGGAGACTAAGGTAGAGGTTGCCTTCTCTGGT ACGGATGGCAAGGAAGAGGATACTAAACCTGACAATGCGGGCTCGGGGCTTAAAGTGTTGCCACCATGGATGATCAAACAAGGAATGAACCTTACAAAGG AGCAACGAGGAGAGATAAAGCATGAGTCTAAGATGGATGGCGATATATCATCTTCAGCCTTCTCGGATGACAAGAAATCTGCCGTTGTCGATGAAAAACA GAGCATACAGGACGAATACGTGAAAGCTTACTATGCTGCGATCTTAAAGCAACAAGAAGAGCTGGAAGCCGCAAGGAAGCAAGAAGAGTTGCGAGCAGCT CCTAATTTGAACGCCCCCCCACCGGAATCCTCACCCGAACGTCAAGTTGGGATGAAGTCCAAGCGCGAGGAAGACGACGAGGAAGATGATGACTGGGAGG ATGGAGCAGCAGCAGGAGGCAACGGCTCTAGTGAAGGTTACAGGCTGAACGATCTGAACGAAGAAGCGAAAGCTACTCCGGAGGATGAAGACGACGATAT CGATTGGGAAGAGGGTTAA
AA sequence Show only first row Show all	>Lus10019269 pacid=23141420 polypeptide=Lus10019269 locus=Lus10019269.g ID=Lus10019269.BGIv1.0 annot-version=v1.0 MMSLEPWNRLVKLAARAFYDDYTTKGENQPKIARSDNRGMAVVILDALTRRQWVREEDLAKDLKMHTKQIRRTLRFFEEEKLVTRDQRKETAKGAKQYSA AVAATTEVQNGKEGEDKVKLLLHSYCCLDYAQIYDVVRYRLHRLKKKLREELEEKNTIQEYVCPNCGKRYNALDALQLVSMVDEYFHCENCNGELVAEND KLSVADGDTDDNARRRRREKLKDLLQKMETQLKPLTEQLNRVKDLQVPDFGNLLAWEARAIAAGRDLNGSNSNDPSKATQGYGAPLPYLGETKVEVAFSG TDGKEEDTKPDNAGSGLKVLPPWMIKQGMNLTKEQRGEIKHESKMDGDISSSAFSDDKKSAVVDEKQSIQDEYVKAYYAAILKQQEELEAARKQEELRAA PNLNAPPPESSPERQVGMKSKREEDDEEDDDWEDGAAAGGNGSSEGYRLNDLNEEAKATPEDEDDDIDWEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	0	1
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10014659 [exp]	6.3	0.9109
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	6.3	0.8963
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10037680 [exp]	7.6	0.8994
AT5G37190		CIP4	COP1-interacting protein 4 (.1...		Lus10006453 [exp]	11.7	0.8992
AT1G03910			unknown protein		Lus10035558 [exp]	15.7	0.8984
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027857 [exp]	20.1	0.8793
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10015027 [exp]	21.5	0.8840
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	23.0	0.8781
AT1G30890			Integral membrane HRF1 family ...		Lus10025577 [exp]	23.8	0.8883
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	25.2	0.8935

Compare expression of checked genes

Lus10019269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.