Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49800 272 / 4e-87 BSD domain-containing protein (.1) AT5G65910 270 / 2e-86 BSD domain-containing protein (.1) AT1G10720 157 / 3e-43 BSD domain-containing protein (.1) AT2G10950 100 / 2e-23 BSD domain-containing protein (.1) AT3G24820 54 / 2e-08 BSD domain-containing protein (.1) AT1G26300 54 / 5e-08 BSD domain-containing protein (.1.2) AT1G69030 50 / 2e-06 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011556 [exp] 610 / 0 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10039982 [exp] 117 / 8e-29 AT2G10950 156 / 2e-44 BSD domain-containing protein (.1) Lus10027706 [exp] 114 / 2e-28 AT2G10950 147 / 9e-42 BSD domain-containing protein (.1) Lus10038170 [exp] 47 / 5e-06 AT3G24820 162 / 3e-51 BSD domain-containing protein (.1) Lus10036831 [exp] 48 / 6e-06 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2) Lus10025929 [exp] 47 / 6e-06 AT3G24820 161 / 2e-50 BSD domain-containing protein (.1) Lus10019194 [exp] 47 / 1e-05 AT1G26300 294 / 8e-99 BSD domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006400 [exp] 330 / 1e-109 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G008400 [exp] 314 / 3e-102 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.014G014200 [exp] 186 / 4e-54 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1) Potri.018G125400 [exp] 144 / 4e-39 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.T125207 [exp] 144 / 4e-39 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.006G065200 [exp] 133 / 8e-35 AT2G10950 193 / 1e-58 BSD domain-containing protein (.1) Potri.010G137900 [exp] 55 / 3e-08 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2) Potri.008G111900 [exp] 51 / 6e-07 AT1G69030 281 / 6e-94 BSD domain-containing protein (.1) Potri.002G242200 [exp] 48 / 3e-06 AT3G24820 167 / 4e-53 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10019271 pacid=23141296 polypeptide=Lus10019271 locus=Lus10019271.g ID=Lus10019271.BGIv1.0 annot-version=v1.0 ATGTCGTGGCTAGCAAGGTCTATCGCCAACTCTCTCAAGCTCGACGACGACGATGCTGACGGGAACGACGACCATAAGGACTCCAAATCACCCCCGACGG AGGAGACCGATCAACATTCTCCTTCGTCAGCTGCCAGTTCCACCACCACTCCCCGTGGCGTCAAGGAAGACATCTCCGAGCTCACCAAGACCCTAAGCCG CCAGTTCTGGGGGGTCGCCTCGTTCCTCGCTCCTCCGCCGGAATCCTCTTCACCTCCTGCTCAGATCTCTGATGAATCCCCTCAGGAGACGGAGAATCGG CAGCTGTTGGACCCAGACGAGGCCGATGATGCTTTGATTGAAGGAATACGGAGCGATTTCGCGGAAATTGGTGGGAGATTCAAGTCCGGGATCTCGAAGC TGTCGAGTAACAAGGCGGTGTCTGAGATCACGAAGATCGCTTCGAACTTCCTGCAATTTGCGTCGGAGGGAGATGTGAACGACGAGGATTTGATCGGGAC TGCTGTCGGTGTGACCGAGGAGGCTGTTGCTTTCGCGAGGGATGTATCTATGCATCCCGAGACTTGGCTCGACTTCCCTGTTCCTGAAGTGGACGATTTT GAGAAGGATTTTGACATGTCCGATGCCCAGCAGGAGCATGCATTAACTGTTGAACGCCTAGCCCCCAGGCTAGCTGCTCTGCGAATTGAACTCTGTCCAG GTTATATGAGTGAGGGATGCTTTTGGAAGATTTACTTTGTGCTTCTGCACCCTAGACTTAGTAAAGAAGATGCTCTGCTGCTCTCTACTCCACAGATAAT GGAAGCTAGGGCAATGCTATCACAGGAGCTACAGAGGAGAGCTAAGGCAAAACCCAGTTCAAGTGCTTCGGAATCCATAGAAGCTGCTGATTCATCGCAT CAACAGTCTCTTCCAGTGCCTTCTCATACCGAGACAGTTCCCCAAGATACTGTGGTGGCCGAAGCTGAAAAAGAGAAGCACGCAATTCAAAGCATAGATG TCGAGATAGTTGACAAAGCTGTCGTCGTTCAGGAACAAACTACTCCTCCCCATGCAAGCTCATCTGCTAATGTCACGGTGCACCAGAAATTCGAGGATGA CGACGAAGATGGTGACGATTGGTTGAAAGACGAAACTTCCGAAACCGTCGGTACCAGTGGCACCAATAAACACGTGGATCATGACGATGATGAAGACGTA TCGTTCAGTGACCTCGAAGATGATGATGAGGAAGGCGATGTGCCGGTAAGTTACAAGAAGGTGACCTCGGAGAACAAGGAATCCAACGATTGGCTTGATG TTGAAGACATTGATGTGCTGTGA
AA sequence Show only first row Show all	>Lus10019271 pacid=23141296 polypeptide=Lus10019271 locus=Lus10019271.g ID=Lus10019271.BGIv1.0 annot-version=v1.0 MSWLARSIANSLKLDDDDADGNDDHKDSKSPPTEETDQHSPSSAASSTTTPRGVKEDISELTKTLSRQFWGVASFLAPPPESSSPPAQISDESPQETENR QLLDPDEADDALIEGIRSDFAEIGGRFKSGISKLSSNKAVSEITKIASNFLQFASEGDVNDEDLIGTAVGVTEEAVAFARDVSMHPETWLDFPVPEVDDF EKDFDMSDAQQEHALTVERLAPRLAALRIELCPGYMSEGCFWKIYFVLLHPRLSKEDALLLSTPQIMEARAMLSQELQRRAKAKPSSSASESIEAADSSH QQSLPVPSHTETVPQDTVVAEAEKEKHAIQSIDVEIVDKAVVVQEQTTPPHASSSANVTVHQKFEDDDEDGDDWLKDETSETVGTSGTNKHVDHDDDEDV SFSDLEDDDEEGDVPVSYKKVTSENKESNDWLDVEDIDVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49800			BSD domain-containing protein ...		Lus10019271 [exp]	0	1
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	1.0	0.8828
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	1.4	0.8592
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	1.7	0.8584
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	2.2	0.8534
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	2.4	0.8407
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	4.9	0.8550
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031797 [exp]	10.7	0.8089
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	11.8	0.8166
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	15.7	0.8402
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	16.1	0.8294

Compare expression of checked genes

Lus10019271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.