Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22850 69 / 4e-14 bZIP ATBZIP6 basic leucine-zipper 6 (.1.2) AT3G49760 64 / 4e-13 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT4G37730 64 / 4e-12 bZIP ATBZIP7 basic leucine-zipper 7 (.1) AT5G49450 58 / 1e-10 bZIP ATBZIP1 basic leucine-zipper 1 (.1) AT3G30530 57 / 2e-10 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G15830 54 / 5e-09 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G75390 52 / 1e-08 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT2G18160 52 / 2e-08 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT1G13600 52 / 2e-08 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G04038 51 / 5e-08 bZIP ATBZIP48 basic leucine-zipper 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011557 [exp] 190 / 2e-62 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10011722 [exp] 138 / 6e-41 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10001347 [exp] 60 / 2e-11 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10024279 [exp] 60 / 2e-11 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10013059 [exp] 61 / 3e-11 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10029101 [exp] 59 / 8e-11 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10007726 [exp] 58 / 1e-10 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1) Lus10018662 [exp] 58 / 1e-10 AT3G49760 82 / 2e-20 basic leucine-zipper 5 (.1) Lus10028333 [exp] 52 / 2e-08 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G007100 [exp] 122 / 8e-35 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.007G006900 [exp] 115 / 4e-32 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.004G111100 [exp] 66 / 3e-13 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.017G106700 [exp] 61 / 1e-11 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 60 / 5e-11 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.010G135200 [exp] 58 / 2e-10 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.009G119700 [exp] 56 / 8e-10 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.014G013400 [exp] 54 / 3e-09 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1) Potri.002G031900 [exp] 52 / 1e-08 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.004G158200 [exp] 52 / 1e-08 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10019273 pacid=23141431 polypeptide=Lus10019273 locus=Lus10019273.g ID=Lus10019273.BGIv1.0 annot-version=v1.0 ATGTTCGAAAACTCCGCGTTTTTGAACTTCGATTACGACCTCTTCCCTTCCCTGGATAGGGACGATCACTTCTATTCTCCACACGCTATGTTAATCTTCT CTAGCAACGATGATGACGTCATCATTCCACTTGCGAAATTCGCGGAGAAACCGGACATGATATCATTGACGGTGGATCAGACCACGAAATCCTGTGGCTC GAACGCTGCGACCACCATGGGGGCCGAGCAGTCGGTGATTGAGGAGCGAAAGAGGAGGCGAATGGTATCGAACAGGGAATCCGCGAGGAGGTCTAGGATG AGAAAACAAAAGCACTTAGAGAACCTAAGGAACCGGCTGAACCGGCTTCGGGTCGAGAACAGAGAACTGACCGACCGGGTCCGGTTCGTTTCGTACCACT TGAATCGGGTGCGGACAGACACGAACCGGCTCCGGTCCGAATACATCATGCTCCGCCGAAAACTATCGAACGTCGGCCACATATTATTGCTCCGCCAGCT GTCCTCCGCCACCTCCACTGGATGGCCATGCAATAACATGATATTCCCCGCCGTCCCCTCCGGCGCCGCGGCTGAAAAACTGCCATCGTTAATCACTTCA TAA
AA sequence Show only first row Show all	>Lus10019273 pacid=23141431 polypeptide=Lus10019273 locus=Lus10019273.g ID=Lus10019273.BGIv1.0 annot-version=v1.0 MFENSAFLNFDYDLFPSLDRDDHFYSPHAMLIFSSNDDDVIIPLAKFAEKPDMISLTVDQTTKSCGSNAATTMGAEQSVIEERKRRRMVSNRESARRSRM RKQKHLENLRNRLNRLRVENRELTDRVRFVSYHLNRVRTDTNRLRSEYIMLRRKLSNVGHILLLRQLSSATSTGWPCNNMIFPAVPSGAAAEKLPSLITS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22850	bZIP	ATBZIP6	basic leucine-zipper 6 (.1.2)		Lus10019273 [exp]	0	1
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10007670 [exp]	1.7	0.9489
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	3.7	0.9537
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	4.9	0.9540
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	7.7	0.9464
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	13.0	0.9464
AT5G03890			unknown protein		Lus10015117 [exp]	16.2	0.9370
AT2G20080			unknown protein		Lus10034960 [exp]	16.9	0.9250
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	19.8	0.9423
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	20.0	0.9434
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	21.4	0.9329

Compare expression of checked genes

Lus10019273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.