Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22840 252 / 2e-77 GRF ATGRF1 growth-regulating factor 1 (.1) AT4G37740 246 / 5e-75 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G13960 137 / 1e-35 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G36400 127 / 2e-32 GRF ATGRF3 growth-regulating factor 3 (.1) AT2G06200 119 / 1e-30 GRF ATGRF6 growth-regulating factor 6 (.1) AT3G52910 120 / 1e-29 GRF ATGRF4 growth-regulating factor 4 (.1) AT5G53660 101 / 2e-23 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G24150 100 / 2e-22 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 79 / 1e-15 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 45 / 0.0002 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011558 [exp] 853 / 0 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10011559 [exp] 415 / 3e-141 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 410 / 2e-139 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1) Lus10020352 [exp] 143 / 2e-38 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 139 / 7e-36 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10033441 [exp] 133 / 4e-34 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 132 / 6e-34 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10014380 [exp] 128 / 9e-34 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10037668 [exp] 114 / 1e-28 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G007200 [exp] 346 / 7e-113 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1) Potri.007G007100 [exp] 336 / 9e-109 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1) Potri.014G012800 [exp] 278 / 9e-87 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.002G115100 [exp] 260 / 6e-80 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.001G169100 [exp] 145 / 3e-39 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 142 / 1e-37 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 138 / 2e-36 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 137 / 4e-36 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 134 / 3e-35 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 127 / 9e-33 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10019274 pacid=23141409 polypeptide=Lus10019274 locus=Lus10019274.g ID=Lus10019274.BGIv1.0 annot-version=v1.0 ATGGATTTTGGGGTTCTGGGTTTGGATGTAGGGCATCCTCCTCTTCATCCACCTCAGCTGGAGATTGCATCATCAGCTTCTGCTCAGGATGTTGTCTGGA TGAAACCCTCAAAGATCCAGAGGACTAGTGAAGATGAACAGCAACAACAACAACAACAACAAAATGTTGACTTCTCTCCTCCTAATAGGACAATATTGAG ATCTAATTCAACTTCTTACTATCCTCCTCCAGCTCCTCCTCCAGGGAGCAGTTTGAATGTGACAATGCATGGAGTTAGAGGGCCATTCACTCCATCTCAA TGGATAGAGCTTGAACACCAAGCCTTGATCTACAAATACATAACAGCAAACGTTGCAGTTCCTTCTAATTTGCTCAATCCCATCAAGAAGTCTCTTTACC CTTTTGCCTTGTGTAGTAATAATACTATCTCTTCTGCTGCATCCTTCATCCCGAGTCATTTGGGATGGGGAGCTTTCCATCTGGGTTACCCAGGTAGCGC CAACGATCCTGAACCAGGAAGGTGTCGCCGGACAGATGGGAAGAAATGGCGGTGCTCTAGAGATGCTTTTGCTGACCAGAAGTATTGTGAAAGGCACATT AGCAAGGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGGACCAAAGTGGTGTCAACTAATTCTAATTCTAATGCTGCTGCTGCTGCTGGGGCCAATGTTC GAGCTGCGTCCAACTGCATTTCCATCACGCAGCAGCAGCTCAAGTACATGCAGCAACTGACTGCTCATAGAAACTCTTCTCCTGATGCATTTCCAAACAG GTTTACTCTGACCGACGTGAATGCCAACACCAACGGTAGATTTCAAGTTCCGCAAGCCCCTAAGAAAAACTTCGCAATCAAAGAGTCTCCTTATTCTGAG TTTGGACATGTCTCCTTCGACTCGTCGCTGAACCCTTCACAACATAAGAACACAAGCGGTGGCTGCAGCTACAATTCCTTCTTGAACTTCAATGGTCAAG ATCATACTCAAGACCAGCACTCTCTTCATCAGTTCATGGACAATGACTGGCCTAAAGATCATCAGTCCAGCCGCAACGTAATCACCTGGCCCGAAGATCA GCTCAAGTCCGACTGGACTCAGCTCTCGATGTCAATACCAATGACTTCCTCGCCACCTCACGAGAAACTGGCACTCTCACCTTTGAGACTGTCTCGCGAA CTCGACACAAAACAAACCGCCAGCTGGATGCGTATCCCTTGGGGCGGTGCTTCGATGGGCGGTGGTCCTCTTGGCGAGGCGTTAAGTGGCAATGTGAAAA GCACGGTGACTGAAGAGCTGGGGTTCTCGCCAACTGGCGTGCTGCAGAAGGCAACTTTCGGGTCGTTGTCTAATAACAGCAGCTCCGGTAGCAGCCCGAG AGGAGGAGACGAGAGCAAGAGGAACCACCTCTGCGAAGATTTGATTGGATCGAGGATTGCGAGTTCGATTGCCGTGCCATATCTGTAA
AA sequence Show only first row Show all	>Lus10019274 pacid=23141409 polypeptide=Lus10019274 locus=Lus10019274.g ID=Lus10019274.BGIv1.0 annot-version=v1.0 MDFGVLGLDVGHPPLHPPQLEIASSASAQDVVWMKPSKIQRTSEDEQQQQQQQQNVDFSPPNRTILRSNSTSYYPPPAPPPGSSLNVTMHGVRGPFTPSQ WIELEHQALIYKYITANVAVPSNLLNPIKKSLYPFALCSNNTISSAASFIPSHLGWGAFHLGYPGSANDPEPGRCRRTDGKKWRCSRDAFADQKYCERHI SKGRHRSRKPVEGTKVVSTNSNSNAAAAAGANVRAASNCISITQQQLKYMQQLTAHRNSSPDAFPNRFTLTDVNANTNGRFQVPQAPKKNFAIKESPYSE FGHVSFDSSLNPSQHKNTSGGCSYNSFLNFNGQDHTQDQHSLHQFMDNDWPKDHQSSRNVITWPEDQLKSDWTQLSMSIPMTSSPPHEKLALSPLRLSRE LDTKQTASWMRIPWGGASMGGGPLGEALSGNVKSTVTEELGFSPTGVLQKATFGSLSNNSSSGSSPRGGDESKRNHLCEDLIGSRIASSIAVPYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019274 [exp]	0	1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011558 [exp]	1.0	0.9771
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	2.8	0.9429
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008497 [exp]	3.3	0.8993
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	3.9	0.9270
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10007929 [exp]	5.8	0.8877
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	10.1	0.9055
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	15.0	0.9115
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	15.8	0.9074
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	16.4	0.9011
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	17.0	0.8764

Compare expression of checked genes

Lus10019274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.