Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14300 148 / 4e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 146 / 2e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 143 / 1e-39 XF41, ATRBP1 RNA-binding protein 1 (.1) AT4G26650 143 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 136 / 1e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 136 / 4e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 130 / 2e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G40490 127 / 4e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 119 / 9e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 118 / 3e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011560 [exp] 439 / 3e-155 AT4G14300 94 / 5e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011728 [exp] 204 / 6e-64 AT5G55550 142 / 3e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10043124 [exp] 144 / 1e-39 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 142 / 9e-39 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 140 / 1e-37 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 138 / 5e-37 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 137 / 2e-36 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 134 / 3e-36 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039054 [exp] 134 / 8e-36 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170400 [exp] 144 / 2e-39 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G015700 [exp] 141 / 3e-38 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 140 / 7e-38 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 139 / 1e-37 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 139 / 3e-37 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G195300 [exp] 136 / 1e-36 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G222400 [exp] 135 / 5e-36 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G115000 [exp] 132 / 5e-36 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1) Potri.016G010200 [exp] 134 / 1e-35 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 134 / 2e-35 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10019276 pacid=23141427 polypeptide=Lus10019276 locus=Lus10019276.g ID=Lus10019276.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGAGGAGGAGTACAAGAAACCATTCAGCAGCTACCTCGCCCAAGGCTGTTCGTAGGCGGACTGAAAATGGAGGCCACGGGGTTATTTCTCC AGGAGCACTTTAGGGAGTATGGCACATTGAAAGATTGTTTCATCTGTTACAACAAGGAAACTGGACTAAGCCGTACTTTCGGTTTCGTGGAATTCGAAGA CCCCGCTGTTGCTCAGCGTGTTCTTCAAGATCGGCATTTCATTCTAGGCCAAAAGGCCGATGTGTCCGTAGCTAAAGAGAGGAACCTCCACAATCGCAAT GACAGCAAGAAGATCTTCGTCGGTGGCTTACCGCCAGCAGTTACACAGCAGGAGCTGAGGAGTTTCTTCGAGAGGTTCGGGACAGTGACTGATGCTGTCC TGGTTCACGATAGGATTACCAGAGCACTTCGAGGGTTTGGATTCGTAACCTTCGAATCCAAAGACTCGGCAGATGCAGCTCTGCAGTCCAGATATCACGA ATTTAAAGGCAGGCGGGTGGAGGTGAAGAGAGCAAATAATCCTATAGTCAGGAACAGTACTACTGTTGGTAACAATGTTGGGTACTATGATTTATCAGTC GACCAGACCGGTTTCTTCGGTTATGGGTCTCCAGATTGTTATTACTGGTACCATCATTGTTTCTGGAACATGAACTACCCATATTATGAATTTCCTGCAA CAAATTACTATGCTGCTGGCAGCTGGTACAGTGGCTATGGCTATGCTGAGGGTGGGATTGCTGGGGATGAAATCGGGACCGCTGGATGTCAGATTGCTGA TCATCACGGTACTCAGCATGATACAGAGGATTCAGAAATCGATATCGATTCGTTCGACATGAAGAACTATCTTCTGGATCAAGAAGATGAAGCAGATGGG TCAGAATCCGACATTGAAAGAAGTCAGCCTAAGTTGATTAAAGGCAAGTCCTTTATTGCAGCCCCACAATGA
AA sequence Show only first row Show all	>Lus10019276 pacid=23141427 polypeptide=Lus10019276 locus=Lus10019276.g ID=Lus10019276.BGIv1.0 annot-version=v1.0 MEGGGGVQETIQQLPRPRLFVGGLKMEATGLFLQEHFREYGTLKDCFICYNKETGLSRTFGFVEFEDPAVAQRVLQDRHFILGQKADVSVAKERNLHNRN DSKKIFVGGLPPAVTQQELRSFFERFGTVTDAVLVHDRITRALRGFGFVTFESKDSADAALQSRYHEFKGRRVEVKRANNPIVRNSTTVGNNVGYYDLSV DQTGFFGYGSPDCYYWYHHCFWNMNYPYYEFPATNYYAAGSWYSGYGYAEGGIAGDEIGTAGCQIADHHGTQHDTEDSEIDIDSFDMKNYLLDQEDEADG SESDIERSQPKLIKGKSFIAAPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10019276 [exp]	0	1

Compare expression of checked genes

Lus10019276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.