Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49750 366 / 9e-129 AtRLP44 receptor like protein 44 (.1) AT5G65830 335 / 3e-116 ATRLP57 receptor like protein 57 (.1) AT3G28450 128 / 1e-33 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 118 / 4e-30 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 110 / 3e-27 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 100 / 8e-24 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G43740 90 / 2e-21 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G34210 91 / 1e-20 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT5G62710 91 / 1e-20 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 86 / 6e-19 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011561 [exp] 462 / 1e-166 AT3G49750 394 / 7e-140 receptor like protein 44 (.1) Lus10034278 [exp] 106 / 6e-27 AT5G48380 189 / 5e-55 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 108 / 1e-26 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030812 [exp] 104 / 2e-26 AT3G28450 252 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) Lus10002147 [exp] 106 / 8e-26 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10037226 [exp] 97 / 8e-24 AT5G48380 221 / 6e-68 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 99 / 3e-23 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002579 [exp] 91 / 5e-22 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10036697 [exp] 88 / 2e-20 AT5G48380 215 / 8e-66 BAK1-interacting receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012300 [exp] 387 / 6e-137 AT3G49750 343 / 1e-119 receptor like protein 44 (.1) Potri.007G007500 [exp] 381 / 1e-134 AT3G49750 364 / 5e-128 receptor like protein 44 (.1) Potri.017G074400 [exp] 123 / 8e-32 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 119 / 2e-30 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G177900 [exp] 119 / 4e-30 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.001G349900 [exp] 118 / 4e-30 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G240000 [exp] 112 / 5e-28 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.004G081700 [exp] 110 / 4e-27 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G003800 [exp] 107 / 3e-26 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 105 / 1e-25 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10019277 pacid=23141353 polypeptide=Lus10019277 locus=Lus10019277.g ID=Lus10019277.BGIv1.0 annot-version=v1.0 ATGAAGCAGCTCATCGTCCTTCTAACCCTAATCTGCACACCCCTACTAACAACCTCCCACCCAAATGACGAATCCTGCCTAACAAACCTAAAGCAATCCC TGAAAGACCCAGCAAACTCCCTCAACAACTGGACGAACCCCAACTTCGCAAACCCATGTTCAGGATTCACATCCTACCTCCCCGGAGCAACCTGCAACAA CGGCAGAATCTACAAGCTCTCCCTAACCAATCTCGCCTTACAAGGCTCAATCTCTCCTTTCCTCTCCAACTGCACAAACCTCCAATCGCTCGATCTATCA TCCAACTCGATCTCAGGCGCCATCCCGACTGATTTGCAGTACTTGGTCAACTTAGCAGTGCTGAATCTCTCTGCTAATGAACTGTCAGGTGAGATCCCGC CGCAGATTGCAATGTGTGCGTATTTGAACGTGATCGATCTGCATCAGAATCAGCTGACCGGTCAGATCCCGCAGCAGCTGGGTTTGCTGGTGAGGCTGTC GAGTTTTGACGTGAGTGGGAATAAGCTGTCCGGGTTGATTCCTGGGTCATTGGGGAATCGGAGTGGAAATTTTCCGAGGTTCAATGGGAGTTCTTTCCAA GGGAATAAGGATCTTTACGGGTATCCATTGCCGCAGATGAAGGCGAAAGGGTTGTCTGTGTTGGCGATCGTCGGGATTGGGTTGGGGAGTGGGTTGGCTA GCTTGGTGATTAGCTTTGCTGGGGTTTGTGTTTGGTTGAAGATCAGTGAGCATAAGATGGCTGTTGAAGAAGGGAACAAGATCAGCCAGCTTATGCCTGA GTACTGA
AA sequence Show only first row Show all	>Lus10019277 pacid=23141353 polypeptide=Lus10019277 locus=Lus10019277.g ID=Lus10019277.BGIv1.0 annot-version=v1.0 MKQLIVLLTLICTPLLTTSHPNDESCLTNLKQSLKDPANSLNNWTNPNFANPCSGFTSYLPGATCNNGRIYKLSLTNLALQGSISPFLSNCTNLQSLDLS SNSISGAIPTDLQYLVNLAVLNLSANELSGEIPPQIAMCAYLNVIDLHQNQLTGQIPQQLGLLVRLSSFDVSGNKLSGLIPGSLGNRSGNFPRFNGSSFQ GNKDLYGYPLPQMKAKGLSVLAIVGIGLGSGLASLVISFAGVCVWLKISEHKMAVEEGNKISQLMPEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	0	1
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	1.7	0.9694
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10017595 [exp]	2.0	0.9636
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	4.7	0.9692
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	5.5	0.9635
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	5.7	0.9676
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10011561 [exp]	5.7	0.9611
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	7.0	0.9624
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10041241 [exp]	7.6	0.9389
AT2G46890			Protein of unknown function (D...		Lus10009861 [exp]	8.5	0.9401
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	9.4	0.9542

Compare expression of checked genes

Lus10019277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.