Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49740 692 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 383 / 8e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 353 / 2e-109 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT3G47840 343 / 1e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 347 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 348 / 7e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 350 / 1e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 343 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 344 / 4e-106 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 346 / 9e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011563 [exp] 720 / 0 AT3G49740 340 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011562 [exp] 597 / 0 AT3G49740 317 / 2e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 379 / 3e-119 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 373 / 5e-118 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 368 / 4e-116 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 358 / 4e-112 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 357 / 5e-112 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 362 / 2e-111 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002054 [exp] 354 / 1e-109 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155100 [exp] 370 / 5e-117 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 370 / 5e-116 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 370 / 2e-114 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G146800 [exp] 358 / 3e-113 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 363 / 5e-112 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 360 / 5e-111 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 352 / 7e-111 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 348 / 9e-108 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 343 / 2e-105 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 340 / 8e-105 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019278 pacid=23141402 polypeptide=Lus10019278 locus=Lus10019278.g ID=Lus10019278.BGIv1.0 annot-version=v1.0 ATGAGAAAGTTCCTAACCAAAATAACCGAACCCGCCAAAACCAAACTCCTCCAACTCAACAAACAACTGGCCAGTCTCGTTCGTTCCCGCCACTTCCAAG ATGCACTCCACCTGTTCGACGAAATTCATTCTTCTTCTTCGTCTCCCCATATCCACCTCAAACCAGACGAGTACACCCTCTCCGCGGGCCTCACCGCATG CGCCAATCTCCGGAACGCCGCATTCGGCTCCAAGCTCCACGCCCACGCCGTCAAATCCGGCTTGAAATCCCACCTCCACGTTTCCAACACGCTTCTCCTT GTGTACGCCAGAGCTCGAGATGCTTTTTCCATGAAACGCGTTTTCGGGGAGATTGAGTACCCGGATGCGTTTTCGTACGCTACGGTGTTGTCTGAGTGTG CGAAGAGTGGGGATTTGGAGTATGCATTCCAGGTGTTCGATGAAATGCCTGCCAAAGATGTGTCTGCGTGGAATGCGATGATTACCGGGTGTGTGGAGAG TGGGAATGAGGGAGTCGGGTTTTTGGTGTTCAGGGATATGCATAGGTTAGGTGTTTCGCCTGATAACTACAGCTTTGGAAGTGTTCTTAGTGGGTGTTGT TTGGAAAAGGCAGAGTTTGGGAGGCAGGTGCATTCTCTGGTTATTAGAACTGGTTCTATGGCGGGAACTTCCATTGTTAATGCTTTGCTTACTATGTATT TCAGTTATGAAGAAGTTGGTAATGCAGTTTTAGTATTTGAGGAAGTAGAAGATGAGGTGCACAATCATATTTCGTACAATGTGATGATTGGCGGTTTACA AAGTGCTGGGATGGTTGATAAAGCCATCCTTATGTTCAAAAAAATGCTAGCTTGTTGGCTTTCTCCTTCGGAATTGAGTTTTGTGAGTCTCGTCAGCTCG TGTTACCATACTACTATAGGCAGTCAAGTTCATTCGCAGGTTTTCAAGAGGGGGTTTGAAGCTCACACTGTGGTAAGCAATTCAATGATAACCATGTACG CAAACTTTAAGGATATGGTTTCAGCTTACATGATCTTTGACAGTCAGAGAGCAAAGGATGATGTCTCATGGAATGCCATCATATCCGGCTATTCTCAGTG GAATTGTGGTAGATCAGCGATCTCCTCGTACATTGAAATGCAGAAGGCAGAGTTGAAACCAGATGAGTTCACTTTCGGAAGCTTATTAGCAAGTTCAGAT TCTCTGAGAACACTGGAGATGATTCATTCAAATGTCTTTAAAGCAGGGCTGGTTTCAAGCATTCAGGTATCGAATTCATTGATTTCAGCATACTGCAAAC ATGGCAATGTCGAAGAGGGGCAAAAAGTATTTCTCAGCATGTTGTCAAGAAGTTTGGTGTCTTGGAACACTATCATGTCAGGTTTCTCGTTGAATGGATT TCACATACAGGGGTTAGAACATTTCTCTCAACTGCTAACTTCTGGATATTGCTTTCTCCCTAATGAGCATACCCTGACCATTGGTTTGAGCATTTGTGCA AGCATATCAGCTTCAGAACAAGCAAAGCAGATTCACGCTTACATCCTGAGATTCAACTCCTCTCCAAGAGGGTCCTTAGGAAACGCCCTGATTACAACTT ACTCGAAATGCGGCCTTCTCGATTGGTCTTCGAGGGTATTCAGCACCATGTCCGAGAAAGATGTGGTCTCCTGGAACGCCCTGATGTCTGCTTATGCTCA ACATGGGGAAGCGAACGATGCATTAAAATGTCTCGATGAAATGTCCGATTCGTTCGAGGTCAGTCCAGATCAGGCTACGTTCGCTGCAGTTCTCTCTGCC TGTAGCCATGCAGGCTTGGTTGATGAGGGAGCTCGCGTTCTCAACTCCATGGTTGATAGGTATGGGATTAAACCTGGAGTGGATCATTTTGCGTGTGTCA TTGACCTTCTGGGTCGCGCCGGGTATTTTAGTCAGGTGGAGGAGATAATCCAAAGGGAGGATTTTGAAGCTCATCCTAACATCTGGTGGTCATTGATCAG TACTTGCGCTACTCATGGGAACTTGGAACTGGGAAGAAGGGTTGCTGGGTATCTTCTTGAAACTGAACGACATAATTCGTCGGCTTATGTGATGTTAGCT AATATATATGCAGGTACTGGTCAGTGGGAAGAAGCGGCTAATGTGAGGCGAGAGATGGATACGTTTGGGAGGATGAAGCAACCTGGATATAGCTGGATTT GCAGGTAA
AA sequence Show only first row Show all	>Lus10019278 pacid=23141402 polypeptide=Lus10019278 locus=Lus10019278.g ID=Lus10019278.BGIv1.0 annot-version=v1.0 MRKFLTKITEPAKTKLLQLNKQLASLVRSRHFQDALHLFDEIHSSSSSPHIHLKPDEYTLSAGLTACANLRNAAFGSKLHAHAVKSGLKSHLHVSNTLLL VYARARDAFSMKRVFGEIEYPDAFSYATVLSECAKSGDLEYAFQVFDEMPAKDVSAWNAMITGCVESGNEGVGFLVFRDMHRLGVSPDNYSFGSVLSGCC LEKAEFGRQVHSLVIRTGSMAGTSIVNALLTMYFSYEEVGNAVLVFEEVEDEVHNHISYNVMIGGLQSAGMVDKAILMFKKMLACWLSPSELSFVSLVSS CYHTTIGSQVHSQVFKRGFEAHTVVSNSMITMYANFKDMVSAYMIFDSQRAKDDVSWNAIISGYSQWNCGRSAISSYIEMQKAELKPDEFTFGSLLASSD SLRTLEMIHSNVFKAGLVSSIQVSNSLISAYCKHGNVEEGQKVFLSMLSRSLVSWNTIMSGFSLNGFHIQGLEHFSQLLTSGYCFLPNEHTLTIGLSICA SISASEQAKQIHAYILRFNSSPRGSLGNALITTYSKCGLLDWSSRVFSTMSEKDVVSWNALMSAYAQHGEANDALKCLDEMSDSFEVSPDQATFAAVLSA CSHAGLVDEGARVLNSMVDRYGIKPGVDHFACVIDLLGRAGYFSQVEEIIQREDFEAHPNIWWSLISTCATHGNLELGRRVAGYLLETERHNSSAYVMLA NIYAGTGQWEEAANVRREMDTFGRMKQPGYSWICR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	0	1
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	1.0	0.8552
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	2.4	0.8288
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	2.8	0.8478
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10026778 [exp]	3.7	0.7873
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	4.9	0.7956
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038377 [exp]	5.7	0.7851
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	6.3	0.8133
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10022718 [exp]	7.1	0.7426
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	8.2	0.7557
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	8.7	0.7958

Compare expression of checked genes

Lus10019278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.