Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49720 394 / 4e-140 unknown protein AT5G65810 382 / 2e-135 CGR3 cotton Golgi-related 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011564 [exp] 483 / 4e-175 AT3G49720 422 / 4e-151 unknown protein Lus10039648 [exp] 397 / 2e-141 AT3G49720 405 / 2e-144 unknown protein Lus10007228 [exp] 390 / 2e-138 AT3G49720 401 / 6e-143 unknown protein Lus10032796 [exp] 316 / 2e-109 AT3G49720 337 / 7e-118 unknown protein Lus10012481 [exp] 313 / 4e-108 AT3G49720 332 / 1e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082400 [exp] 372 / 2e-131 AT3G49720 393 / 7e-140 unknown protein Potri.001G288200 [exp] 363 / 4e-128 AT3G49720 342 / 1e-119 unknown protein Potri.002G114000 [exp] 330 / 7e-115 AT5G65810 364 / 2e-128 cotton Golgi-related 3, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07021 [flax] [poplar] MetW Methionine biosynthesis protein MetW
Representative CDS sequence Show only first row Show all	>Lus10019279 pacid=23141320 polypeptide=Lus10019279 locus=Lus10019279.g ID=Lus10019279.BGIv1.0 annot-version=v1.0 ATGTCGAGGAGGCAAGTCGGATCCGCCAGGAGATTCGGCGACACCGGAAACTTCCCTTTCTCTTCAGCTCTCCATTCCAAGTCCCGGTCTTCTCCTCTCC TCTCCATCGCCCTCGTCGCCTTCGGAGCTTTCCTTCTCATCGTCTACGCTTATGGCGGCCAAGGTTTGTTCGGCGGTAACAAAGGTGGCTCTATCAAGGT TGAAGGTGACTACACGTGCACGGCAGAAGTGCAGAGAGCGATACCTTTCCTGAAGAAAGCATACGGAGACAGCATGCGTAAAGTTCTGCACGTCGGTCCC GACACTTGTGCTGTTGTATTGACTTTGTTGAAAGAAGAAGAAACCGAGGCTTGGGGTTTGGAGCCATATGACATTGAGGATGCCGATGCAAGCTGCACGA GTCTTGTACGAAAGGGTCTTGTCCGAGTTGCCGATATCAAATTCCCTCTCCCCTACAGGGCAAAGTCGTTCTCCCTTGTTGTGGTGTCGGATGCTCTGGA TTACCTTTCACACAAGTACCTCAATAGGACTCTTCCTGAACTGGCGAGGGTTGCTTCAGATGGTATCGTTATATTTGCAGGTTATCCTGGCCAGCAGAGA GCTAAAGTTGCAGAATTGTCCAAATTTGGACGGCCGCCGAAGATGAGGAGCTCGTCTTGGTGGATTCGCTACTTCGTTCAAACGAGTCTAGACGAGAACG AAGCGGCACAGAAGAAGTTTGAGCAGGCTGCATTGAAGGGCTCATACCAGCCTAACTGTCAAGTATTCCACCTGAAGCCGTACCATTAA
AA sequence Show only first row Show all	>Lus10019279 pacid=23141320 polypeptide=Lus10019279 locus=Lus10019279.g ID=Lus10019279.BGIv1.0 annot-version=v1.0 MSRRQVGSARRFGDTGNFPFSSALHSKSRSSPLLSIALVAFGAFLLIVYAYGGQGLFGGNKGGSIKVEGDYTCTAEVQRAIPFLKKAYGDSMRKVLHVGP DTCAVVLTLLKEEETEAWGLEPYDIEDADASCTSLVRKGLVRVADIKFPLPYRAKSFSLVVVSDALDYLSHKYLNRTLPELARVASDGIVIFAGYPGQQR AKVAELSKFGRPPKMRSSSWWIRYFVQTSLDENEAAQKKFEQAALKGSYQPNCQVFHLKPYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49720			unknown protein		Lus10019279 [exp]	0	1
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	4.0	0.9032
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	4.5	0.8881
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10002870 [exp]	4.6	0.8865
AT1G13750			Purple acid phosphatases super...		Lus10037079 [exp]	5.5	0.8789
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	6.3	0.9022
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	7.8	0.9043
					Lus10025731 [exp]	7.9	0.9023
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	10.0	0.8651
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	11.2	0.8854
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	12.0	0.8782

Compare expression of checked genes

Lus10019279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.