Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67540 554 / 0 Arabinanase/levansucrase/invertase (.1.2) AT3G49880 548 / 0 glycosyl hydrolase family protein 43 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011543 [exp] 771 / 0 AT5G67540 669 / 0.0 Arabinanase/levansucrase/invertase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148800 [exp] 634 / 0 AT3G49880 650 / 0.0 glycosyl hydrolase family protein 43 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [flax] [poplar] B_Fructosidase PF04616 [flax] [poplar] Glyco_hydro_43 Glycosyl hydrolases family 43
Representative CDS sequence Show only first row Show all	>Lus10019280 pacid=23141418 polypeptide=Lus10019280 locus=Lus10019280.g ID=Lus10019280.BGIv1.0 annot-version=v1.0 ATGAGGATGAAGAACAAATCCAGGAAACCAACTACTGCTTTCCCTTGCAATGCAGGGATAAGTAGATGCTCAACGACTTCCGCCATTGTATGGACCTTGG TGGGATTCATTCTCTGCCTTCAGCTCTACAATCTTGTAGGAAGCAATGGTGGTAGTAATAGTAAAGGTGCAGTAAGTGTGAAATTCGGTCATGTAGCACG CCACCGAGCTCTCTTTCGCGAGCTGGAGGAGGTGGAGGAAGAGAATCTGGCGATTCCTCCACCGAGGGGGAAGAGATCTCCGCGAGCTGCGAAGAGGAGG CCTAAGAGGCCGACCACATTGATCGAAGAGTTCCTCGACGAGAATTCTCAGCTCCGGAGCGTGTTCTTTCCTGGGATGAAGACTGCTGTTGATCCTGTGA AGGATGGGAATGGGAGCTTATACTATTACCCCGGGAGGATTTGGTTGGATACGGAAGGGAATCCGATTCAAGCTCATGGAGGGTGCATTCTGTATGACGA GAAATCGGAGATGTATTATTGGTATGGCGAGTATAAAGATGGCCCTACTTACCATGCTCACAAGAAAGGCGCTGCACGGGTTGACATCATAGGAGTTGGT TGTTATTCCTCCAAGGACCTATGGACATGGAAGAACGAAGGCATCGTGTTGCAAGGAGAGGAAACAGACGAAAGCAACGATCTTTTTCACGATCTTTTCA AGACAAATGTCCTCGAGAGGCCGAAAGTAATCTACAATGACAGAACACGAAAGTACGTAATGTGGATGCACATAGACGATACAAACTATACAAAAGCATC CGTCGGCATTGCCCTTAGCGACTACCCAACTGGTCCTTTCGACTATCTAGGCAGCAAAAGACCCCACGGGTACGAAAGCCGAGACATGACCCTCTTCAAA GACGACGATGGCACATCGTACTTAGTGTACTCCTCAGAGGACAATAGCGAACTCCACATCGGACCGCTCACAGCAGACTATCTTGACGTTACTTCTGTTG TCAGAAGGGTACTCATAGGCCAGAAACGCGAAGCTCCAGCGCTGTTTAAGCACGATGGGACTTACTACATGATCACCTCAGGTTGCACGGGTTGGGCACC GAACGAGGCTTTGGCTCATGCGGCCGATTCGGTCATGGGTCCGTGGGAGACCATGGGGAACCCTTGTGTTGGCGGGAACAAGATGTTCCGGCTCGCAACG TTCTTTTCTCAGAGCACGTTTGTGATCCCGATAAGGGGCATTCCCGGTTCGTTCATTTTCATGGCGGACCGGTGGAATCCAGCCGATTTGAGGGACTCGC GGTACGTGCTCAGAGCACGTTTGTGA
AA sequence Show only first row Show all	>Lus10019280 pacid=23141418 polypeptide=Lus10019280 locus=Lus10019280.g ID=Lus10019280.BGIv1.0 annot-version=v1.0 MRMKNKSRKPTTAFPCNAGISRCSTTSAIVWTLVGFILCLQLYNLVGSNGGSNSKGAVSVKFGHVARHRALFRELEEVEEENLAIPPPRGKRSPRAAKRR PKRPTTLIEEFLDENSQLRSVFFPGMKTAVDPVKDGNGSLYYYPGRIWLDTEGNPIQAHGGCILYDEKSEMYYWYGEYKDGPTYHAHKKGAARVDIIGVG CYSSKDLWTWKNEGIVLQGEETDESNDLFHDLFKTNVLERPKVIYNDRTRKYVMWMHIDDTNYTKASVGIALSDYPTGPFDYLGSKRPHGYESRDMTLFK DDDGTSYLVYSSEDNSELHIGPLTADYLDVTSVVRRVLIGQKREAPALFKHDGTYYMITSGCTGWAPNEALAHAADSVMGPWETMGNPCVGGNKMFRLAT FFSQSTFVIPIRGIPGSFIFMADRWNPADLRDSRYVLRARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	0	1
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	1.4	0.9394
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	3.3	0.9164
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	5.2	0.9340
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	5.5	0.9342
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	5.7	0.9337
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	8.9	0.8892
AT2G35860		FLA16	FASCICLIN-like arabinogalactan...		Lus10021247 [exp]	9.2	0.9332
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	10.2	0.9066
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023212 [exp]	10.5	0.8920
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	11.0	0.9122

Compare expression of checked genes

Lus10019280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.