Plant FIBer expression Database

Lus10019282 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49890 112 / 6e-30 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011541
[exp]
214 / 5e-70 AT3G49890 180 / 6e-57 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G172500
[exp]
105 / 3e-27 AT3G49890 156 / 1e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10019282 pacid=23141386 polypeptide=Lus10019282 locus=Lus10019282.g ID=Lus10019282.BGIv1.0 annot-version=v1.0
ATGGGCTACAGCGTTTTCGGTTGGCCCAATACTAACTGGTTTTTCAGGTCCAGCCCGCCAAACTTCAAACGTCGACAGCAAAAACCCAAAGACGACGAAC
CCTCCGAAACACTTGCGGGGTGCCGGGGTTTTTGCCGCAGAGCTACCGTTCCACAAAATCTCCGGCGACCACCGCGAAATTGGCTCGAGTCAGCGGCGGA
GAAAATGGGAGGCTCTCTGAGGAGCGACGAAGTCGGCAGCAGCAGCAGCGAGGAAGAAGATGCGGAGTGGAAAGCAGCCATCCATTCAGTTGCTTCCACC
ACCACTTTCGCCGGATCTTCTCTGGCACAAAGGCTATTGGACGAACTTCTGGAGAAATCCCTGGATTTCGTGGAAGATCATGTCAAGTTACCAGATGTTG
AGCCGGTAGAAGATGAAGGTGGAGTACGATTATTCAAGAACTCCAAAGTAGGGATTTCATTAAATAAAGCTGAGATTCGACGCCCTACGAAGAAACCGAG
ACTCGTTCCTGAACTTACCATTGAAGAGGATTCAAAGAAGTTTAGAAAAGCAGTGAAATCGATAGCTGTGGATGGATCGGAGATAATTGCTGAAGCGAAC
AATGTTGCTCGAAGAGCATTGGCTAGAGTGGAAGCTAGAGAAGCAAGAGCGAAAGAGAAGACCAAGAAGGAAGAGGAAAGGGTTGCTGAGCTTAAGAAGA
TCAGGGGAGAAAAATGGCTGCCTTCTATTGCCAAGGAAATGCAGGAGATTGTTAACGGATCAAACGTTGAGTAG
AA sequence
>Lus10019282 pacid=23141386 polypeptide=Lus10019282 locus=Lus10019282.g ID=Lus10019282.BGIv1.0 annot-version=v1.0
MGYSVFGWPNTNWFFRSSPPNFKRRQQKPKDDEPSETLAGCRGFCRRATVPQNLRRPPRNWLESAAEKMGGSLRSDEVGSSSSEEEDAEWKAAIHSVAST
TTFAGSSLAQRLLDELLEKSLDFVEDHVKLPDVEPVEDEGGVRLFKNSKVGISLNKAEIRRPTKKPRLVPELTIEEDSKKFRKAVKSIAVDGSEIIAEAN
NVARRALARVEAREARAKEKTKKEEERVAELKKIRGEKWLPSIAKEMQEIVNGSNVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G49890 unknown protein Lus10019282
[exp]
0 1
AT1G20770 unknown protein Lus10030736
[exp]
3.0 0.7962
AT3G10530 Transducin/WD40 repeat-like su... Lus10035740
[exp]
10.1 0.7898
AT3G52570 alpha/beta-Hydrolases superfam... Lus10021315
[exp]
14.7 0.7809
AT4G18100 Ribosomal protein L32e (.1) Lus10012195
[exp]
19.1 0.7739
AT2G19740 Ribosomal protein L31e family ... Lus10042028
[exp]
24.7 0.7724
AT1G77280 Protein kinase protein with ad... Lus10024154
[exp]
25.0 0.7282
AT3G13940 DNA binding;DNA-directed RNA p... Lus10029818
[exp]
28.9 0.7752
AT1G63780 IMP4 Ribosomal RNA processing Brix ... Lus10035745
[exp]
29.0 0.7625
AT3G42150 unknown protein Lus10017643
[exp]
29.5 0.7167
AT5G06210 RNA binding (RRM/RBD/RNP motif... Lus10013306
[exp]
29.5 0.7723

Lus10019282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.