Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67500 361 / 1e-126 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G15090 236 / 3e-77 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT5G57490 232 / 9e-76 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G01280 229 / 8e-75 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT3G49920 217 / 1e-70 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011539 [exp] 528 / 0 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 290 / 3e-98 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 283 / 9e-96 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10013271 [exp] 251 / 3e-83 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10015357 [exp] 241 / 3e-79 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 238 / 4e-78 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 231 / 1e-74 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 174 / 8e-53 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 163 / 4e-48 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146800 [exp] 387 / 7e-137 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.007G055800 [exp] 382 / 1e-134 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.014G016300 [exp] 333 / 2e-115 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.008G194900 [exp] 261 / 2e-87 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.010G033500 [exp] 253 / 8e-84 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 251 / 2e-83 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.017G078200 [exp] 242 / 8e-80 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.018G093900 [exp] 231 / 2e-75 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.001G294100 [exp] 208 / 8e-66 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.001G294000 [exp] 200 / 5e-63 AT5G67500 203 / 4e-64 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10019284 pacid=23141368 polypeptide=Lus10019284 locus=Lus10019284.g ID=Lus10019284.BGIv1.0 annot-version=v1.0 ATGAGTAAGGGACCGGGAATCTTCTCCGACATCGGAAAGAAGGCCAGAGATCTGTTGACTGCCGGATACAGCTCCGATCAGAAGTTCACCGTCTCCACGC ACAGCGGGCCTTCCAAAGTCGCTATCACCTCATCTGCTGCTAGTAAGGGAGGACTGTCCACTGGGGATGTTGGAGCAGTATACAAGTACAAGGGCCATAT ATTCGATGTGAAAGTTGACACGCTATCGAACATTGCCACAAACTTTGTGTTCTATGACGTCCTTCCGTCCACAAAGGCAGCTGTCTCATTCAAGTTTCCT GATTACAACTCTGGCAAGTTGGAGGTCCAATATTTCCACCCACATGCAACCTTGACATCGGCAGTCAACCTACACCAGTCTCCAGTTGTCGATGTTTCAG TCACAGTCGGTACCCCAGCTATCGCATTCGGTGCCGAAGCAGGATACAGCACCAGCGCCGGTAACTTCTCCAAGTACACCGCCGGAGTTGGCATCACAAA CCGAGACGCCTATGCATCAGTCATCCTGGGCGACAAGGGCGACACAATGACAGCTTCCTACACTCACCATCTAGACGAGTCGAAGAGGACCGCAGCAGTG GGAGAAATCATGAGGAGGTTCTCCACAAACGAGAACACTTTCACTGTCGGTAGCTCCTACGCCATCGATAACCTCACGCTGTTTAAAGGTAAGCTGAACA ACCACGGGAAACTCTCTGCTCTCATGCAGCACGAGTTCATACCGCAGTCTCTGATGACCATCTCCGGGGAGGTTGACACCAAGGCCCTCGACAAGAATCC CAAGTTCGGAATAGCAGTTGTTCTGAAGCCTGAATGA
AA sequence Show only first row Show all	>Lus10019284 pacid=23141368 polypeptide=Lus10019284 locus=Lus10019284.g ID=Lus10019284.BGIv1.0 annot-version=v1.0 MSKGPGIFSDIGKKARDLLTAGYSSDQKFTVSTHSGPSKVAITSSAASKGGLSTGDVGAVYKYKGHIFDVKVDTLSNIATNFVFYDVLPSTKAAVSFKFP DYNSGKLEVQYFHPHATLTSAVNLHQSPVVDVSVTVGTPAIAFGAEAGYSTSAGNFSKYTAGVGITNRDAYASVILGDKGDTMTASYTHHLDESKRTAAV GEIMRRFSTNENTFTVGSSYAIDNLTLFKGKLNNHGKLSALMQHEFIPQSLMTISGEVDTKALDKNPKFGIAVVLKPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10019284 [exp]	0	1
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10042145 [exp]	1.0	0.9122
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	8.9	0.8768
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	10.2	0.8854
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10025185 [exp]	11.5	0.8662
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10036805 [exp]	12.0	0.8794
AT3G12650			unknown protein		Lus10037700 [exp]	16.0	0.8585
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	21.1	0.8721
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	23.5	0.8627
AT5G08570			Pyruvate kinase family protein...		Lus10017364 [exp]	24.0	0.8261
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	28.2	0.8458

Compare expression of checked genes

Lus10019284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.