Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 1057 / 0 ARA12 Subtilase family protein (.1) AT2G05920 769 / 0 Subtilase family protein (.1) AT5G51750 732 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14240 701 / 0 Subtilase family protein (.1) AT3G14067 688 / 0 Subtilase family protein (.1) AT4G34980 656 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 583 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 575 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 567 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 539 / 0 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011537 [exp] 1385 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 1129 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 927 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 861 / 0 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 753 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 748 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 670 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 665 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 649 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145300 [exp] 1006 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 969 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 952 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 770 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 737 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.001G167300 [exp] 728 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 723 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.015G133800 [exp] 718 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.003G071800 [exp] 715 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 712 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10019285 pacid=23141366 polypeptide=Lus10019285 locus=Lus10019285.g ID=Lus10019285.BGIv1.0 annot-version=v1.0 ATGGCAACTCTGCAACTCCAACACTTCCTCCACCTCCTCCTCCTCCTTCTACCCTTCTCCCATCTCTCCATCGCCGAGAAACAAACCTACATAGTCCAAA CCTCCAATCCCCAACTTCCCACGGTAACTTCCAACGCCGCCGAATGGTACGAATCCTCCTTGAAATCGGTCTCCACAACCGCCGAACTCCTTTACACCTA CACCCACGCGATCCACGGCTTCTCCACGCGGCTCACCCCACGTGAAGCCCAACTCCTCAATTCCCAGCCGGGGATCCTCTCCGTAACCAAGGAATCCATC TACCACCTCCACACCACCCGCTCCCCTGCTTTCCTCGGCCTCGACCTCGCCGCCGATATACTCCCGCAAGCGAACACCGTCGGAGAAGTTGTTGTCGGGG TCCTCGACACCGGCGCGTGGCCGGAGAGCAGAAGCTACGATGACGCCGGGTTCGGCCCTGTTCCGTCGAGTTGGAAAGGGAAATGTGAAGTCGGAACCAA TTTCACGGTCTCCCACTGTAACAAGAAGCTAATCGGAGCGAGATTCTTCGCCAGAGGATACGAAGCAACGGTGGGAAGAGTGGATGAATTGAAGGAATCG AGGTCTCCGCGTGACGACGATGGCCACGGGACGCATACTTCGACCACCGCCGCTGGATCCGCCGTCGAGGGGGCTAACCTGTTTGGATTCGCTTCCGGGA CGGCGCGTGGGATGGCTACCCGCGCTAGGGTGGCGGTTTATAAGGTATGTTGGATGGGCGGGTGTTTCAGCTCTGATATATTAGCAGCCATGGATGTGGC GATCCAGGACGGGGTTAACGTTCTGTCGATGTCGCTCGGCGGTGGGACTTCTGATTATTACAGGGATAGCGTCGCCATTGGAGCTTTCTCTGCTATGGAG AAAGGGATCTTGGTTTCCTGCTCGGCTGGGAATTCTGGTCCTACTTCTTATAGCTTGTCGAATGTTGCTCCGTGGATTACCACCGTCGGAGCTGGGACTA TGGATCGTGATTTTCCTGCTCTGGTTAGTTTGGGAAACGGGAAGAATTACTCCGGCGTGTCGCTTTATAAAGGAAGTCTGTTGAATTCGAATCCATTGCC GTTCGTTTACGCAGCGAATGCAAGTAACGCTACGAATGGGAATTTGTGTATGATTGGAACCCTAATTCCGGAGAAAGTAAAGGGGAAAATCGTTCTATGC GATCGGGGAATGAATGCGAGAGCTCAGAAAGGAGCTGTAGTGAAAGAAGCTGGAGGATTGGGGATGGTTTTGGCCAATACAGCAGTCAACGGCGAGGAAT TAGTCGCTGACGCTCACTTGCTGCCGACGACAGCCGTCGGTCAGAAGAACGGAGATGAAATTAAACGCTATCTGATGTCGGATCGGAATCCGACGGCGAC GATTCTCATCCAGGGGACGAAGCTCGGAGTCCAGCCGTCGCCGGTGGTGGCGGCGTTCAGCTCCAGAGGGCCGAACACGATAACGCCGGATATTCTCAAG CCTGACCTTATCGCGCCAGGTGTCAACATCTTAGCGGGATGGACTGAGAAGCTAGGACCTACAGGGTTAGCCGCCGATCCACGGCGGGTGGAGTTCAACG TTATTTCAGGAACCTCGATGTCGTGTCCTCACGTCGCCGGACTCGCTGCGTTGGTGAAGGCGGCGCATCCAGAGTGGAGCCCCGCCGCAGTGAAGTCGGC GTTGATGACAACTGCTTACGTCAGATACAAGGACGGAAAGAGGATGATTCAGGACGTGGCTACCGGGAACGACTCCACTCCGTTCGATCACGGAGCGGGA CACGTGGACCCTGTATCGGCGCTCAACCCGGGGTTAATCTATGATCTGACAGCTGAGGATTACTTGTCGTTCCTCTGCGCTTTGAACTATACGGACCTGC AGATTAACAGCGTGGCGAGGAGGAACTATACATGCGACCCGAAGAAGAAGCATACTGTGGCGGATTTCAACTACCCTTCTTTCGCGGTTAACGTGGATAC GACTCAGATCGACGGTGGAGGAGGGAAGAAGGCGGCGGCGGCGGCGGTGGTCAAACACACTCGGACGGTGACAAACGTTGGGGGAAGTGGAGTGTACAAG GTGTCAGTTACACCGGATCAGATCCCCGGGGTGAAGATTGTGGTGGAGCCTGAAACGCTGAGTTTTAAGGAGGCTAATGAGAAGAAGGGTTATACGGTGA CGTTTGCGGCGAGTTCGATGGCGGTAGGGACGAATAGTTTCGCGCGGTTGGAGTGGTCAGACGGGAAACACGTGGCGGGGAGTTCGGTAGCTGTTAGTTG GAGTTAG
AA sequence Show only first row Show all	>Lus10019285 pacid=23141366 polypeptide=Lus10019285 locus=Lus10019285.g ID=Lus10019285.BGIv1.0 annot-version=v1.0 MATLQLQHFLHLLLLLLPFSHLSIAEKQTYIVQTSNPQLPTVTSNAAEWYESSLKSVSTTAELLYTYTHAIHGFSTRLTPREAQLLNSQPGILSVTKESI YHLHTTRSPAFLGLDLAADILPQANTVGEVVVGVLDTGAWPESRSYDDAGFGPVPSSWKGKCEVGTNFTVSHCNKKLIGARFFARGYEATVGRVDELKES RSPRDDDGHGTHTSTTAAGSAVEGANLFGFASGTARGMATRARVAVYKVCWMGGCFSSDILAAMDVAIQDGVNVLSMSLGGGTSDYYRDSVAIGAFSAME KGILVSCSAGNSGPTSYSLSNVAPWITTVGAGTMDRDFPALVSLGNGKNYSGVSLYKGSLLNSNPLPFVYAANASNATNGNLCMIGTLIPEKVKGKIVLC DRGMNARAQKGAVVKEAGGLGMVLANTAVNGEELVADAHLLPTTAVGQKNGDEIKRYLMSDRNPTATILIQGTKLGVQPSPVVAAFSSRGPNTITPDILK PDLIAPGVNILAGWTEKLGPTGLAADPRRVEFNVISGTSMSCPHVAGLAALVKAAHPEWSPAAVKSALMTTAYVRYKDGKRMIQDVATGNDSTPFDHGAG HVDPVSALNPGLIYDLTAEDYLSFLCALNYTDLQINSVARRNYTCDPKKKHTVADFNYPSFAVNVDTTQIDGGGGKKAAAAAVVKHTRTVTNVGGSGVYK VSVTPDQIPGVKIVVEPETLSFKEANEKKGYTVTFAASSMAVGTNSFARLEWSDGKHVAGSSVAVSWS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	0	1
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	1.0	0.9304
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	1.4	0.8973
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	3.9	0.8578
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	5.2	0.8944
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10041047 [exp]	11.6	0.7871
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	12.4	0.8347
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	12.7	0.8476
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10000803 [exp]	13.0	0.8218
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	13.6	0.8798
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	15.0	0.8443

Compare expression of checked genes

Lus10019285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.