Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37480 508 / 4e-177 Chaperone DnaJ-domain superfamily protein (.1) AT4G13830 60 / 2e-10 J20 DNAJ-like 20 (.1.2) AT3G13310 59 / 4e-10 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 59 / 4e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 58 / 7e-09 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G39960 57 / 1e-08 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 57 / 2e-08 GFA2 gametophytic factor 2 (.1) AT5G03160 56 / 5e-08 ATP58IPK homolog of mamallian P58IPK (.1) AT2G22360 56 / 6e-08 DNAJ heat shock family protein (.1) AT1G28210 55 / 6e-08 ATJ1 DNAJ heat shock family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011536 [exp] 863 / 0 AT4G37480 484 / 5e-168 Chaperone DnaJ-domain superfamily protein (.1) Lus10003150 [exp] 62 / 9e-11 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002356 [exp] 60 / 4e-10 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10017263 [exp] 59 / 4e-10 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10028453 [exp] 59 / 5e-10 AT2G17880 146 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Lus10041906 [exp] 59 / 6e-10 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10035855 [exp] 62 / 7e-10 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 61 / 2e-09 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10027634 [exp] 60 / 2e-09 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052400 [exp] 566 / 0 AT4G37480 564 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 62 / 3e-11 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 61 / 1e-10 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 60 / 1e-10 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G107600 [exp] 58 / 4e-10 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 57 / 1e-09 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 60 / 2e-09 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G020800 [exp] 57 / 2e-09 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G319100 [exp] 57 / 2e-09 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.002G198000 [exp] 58 / 4e-09 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10019286 pacid=23141367 polypeptide=Lus10019286 locus=Lus10019286.g ID=Lus10019286.BGIv1.0 annot-version=v1.0 ATGGCGATCTTCGGCGGGATGGGAATTCGGTTAGCTTACTACATCAACAACAATGGAACAAGAATCCTCACCCGCCGTTGCGCCTTTTTACCCGGCGTCG GAATTCGGATGTTCAGCACGGCTTACGATTCGACTCGGACGGAGTTCGCCGGGGAAAACGCATATGATATATTGGGAGTTTCGGAGACGTGCTCGTTTGC TGAGATTAAAGCTTCGTTCCGGAAGCTGGCCAAAGAGACTCACCCGGACCTTGCTGAATCTAACTCAGACTCCAAGGATTCGTCTCTACGCTTCATTCGT GTCTCGGCAGCTTATCAGATTCTATCGGATTCTGTTAGAAGAGCTCACTACGACAGCTACTTGTTATCTCAGAGAAAGATCGTGCAGAGGCAATCTAGTT CAGGACGAGATTCAAGGTTGCACACTTATTATAACTCGCATGGAAGTGAAGCAAGAGAGATGGAGGTTGTGGAATGGTTGAGGTGGTATAGGTCAGCCAT AAATGATATATTGGCCGAGAGAAGGGTGGCGGTTGGTACAGGTTACTTCGATGATCTTGAAGCTGATTTATATTCAGCCATTCAAGCGGCATTTTACGGT CCTGGAATTGATTCTATGGACCTGCTTCCGGACCGTTTCGAGGCAGAGGAGAGGTCTGTTTATGAAACTCTGGAAGTCTTGCACTTGGTTTCGGGAAGGG ATGTTTTCGGGATGGTTTCAATTGCGGATGATGTTCCTGAATTGTCTCCTTTTAATGAGAAATTGAGTCCTGGATTTGGTAGTTTGGAACTGCATCAGCC TTTCGAGAATGTGGGATCGAGTACAGGTATCGATGGGGATGTTAGATATTCATCTGATGTGTATAAAGATCTTGAGCTACATGTATGTGGTTCTCTTGTT GCTGTGGCAAGTAGAATTCCTCCTAAAATCGAAGACCGTGCACTGAAGGACAAAGATCCGCAAGATGAAATACGTGTTTATCTATGTTCCAATGGGGATT CCACCCCTGTCGCAGAATCCAGAACTCCACTGGGAACCTTAACTGGATTGGGGACCAGCCCTGATGAAGGTTCATGCTTTGTCTATGACAACTGTGGCAG AAAGACCCATGTCATAATGAAACACAGGACATTCATGGTGAAGCATATGCACTGGTATACTCTAGGAGATGATGTATCTGTTTGTGAATGTAGATGCAGC AGAGCCCGTTTGCCACCAAGCAAATTTTGGCTGTTTGAGCCTCGTTGTGGCATGCATGATATAGGAGGTTGGTATGTTGAAACATTTGGCCGGGACAAAA AGGGTTTGACTGTAACATCCCAGAGATATTGGGATGGCTGTGATGGCAATGGTCTATATGACAAGAGACTCCACCCGGCAATGTATTTGCTCGCTCTTGC TTATAGAACTCTAGACATTGAACACGCAAAACGAAATAAAAGACGGATTACTGATATTGTTGGAAATCAACTATTTAGAGCTCTCCGATGGTGCAAAAAA ATTGCATAG
AA sequence Show only first row Show all	>Lus10019286 pacid=23141367 polypeptide=Lus10019286 locus=Lus10019286.g ID=Lus10019286.BGIv1.0 annot-version=v1.0 MAIFGGMGIRLAYYINNNGTRILTRRCAFLPGVGIRMFSTAYDSTRTEFAGENAYDILGVSETCSFAEIKASFRKLAKETHPDLAESNSDSKDSSLRFIR VSAAYQILSDSVRRAHYDSYLLSQRKIVQRQSSSGRDSRLHTYYNSHGSEAREMEVVEWLRWYRSAINDILAERRVAVGTGYFDDLEADLYSAIQAAFYG PGIDSMDLLPDRFEAEERSVYETLEVLHLVSGRDVFGMVSIADDVPELSPFNEKLSPGFGSLELHQPFENVGSSTGIDGDVRYSSDVYKDLELHVCGSLV AVASRIPPKIEDRALKDKDPQDEIRVYLCSNGDSTPVAESRTPLGTLTGLGTSPDEGSCFVYDNCGRKTHVIMKHRTFMVKHMHWYTLGDDVSVCECRCS RARLPPSKFWLFEPRCGMHDIGGWYVETFGRDKKGLTVTSQRYWDGCDGNGLYDKRLHPAMYLLALAYRTLDIEHAKRNKRRITDIVGNQLFRALRWCKK IA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10019286 [exp]	0	1
AT2G25570			binding (.1.2.3)		Lus10001073 [exp]	6.6	0.7962
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	6.7	0.8533
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	6.8	0.8362
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10013558 [exp]	6.9	0.8123
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	11.5	0.8264
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	12.2	0.8346
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	16.4	0.8249
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	16.7	0.7850
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	17.9	0.7598
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	18.7	0.7714

Compare expression of checked genes

Lus10019286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.