Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67380 615 / 0 ATCKA1, CKA1 casein kinase alpha 1 (.1.2) AT3G50000 613 / 0 ATCKA2, CKA2 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) AT2G23080 592 / 0 CKA3 casein kinase II, alpha chain 3, Protein kinase superfamily protein (.1.2) AT2G23070 560 / 0 Protein kinase superfamily protein (.1) AT3G48750 140 / 5e-39 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G76540 139 / 1e-38 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G20930 138 / 3e-38 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT2G30980 135 / 2e-36 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT1G06390 135 / 2e-36 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT2G38620 132 / 6e-36 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011534 [exp] 640 / 0 AT3G50000 620 / 0.0 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) Lus10011526 [exp] 557 / 0 AT2G23070 632 / 0.0 Protein kinase superfamily protein (.1) Lus10019296 [exp] 555 / 0 AT2G23070 631 / 0.0 Protein kinase superfamily protein (.1) Lus10032849 [exp] 546 / 0 AT5G67380 563 / 0.0 casein kinase alpha 1 (.1.2) Lus10040593 [exp] 140 / 5e-39 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 138 / 3e-38 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10013088 [exp] 138 / 2e-37 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 134 / 3e-35 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10029240 [exp] 131 / 6e-35 AT4G18710 708 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052800 [exp] 626 / 0 AT5G67380 632 / 0.0 casein kinase alpha 1 (.1.2) Potri.005G145900 [exp] 620 / 0 AT5G67380 620 / 0.0 casein kinase alpha 1 (.1.2) Potri.007G054100 [exp] 571 / 0 AT2G23070 638 / 0.0 Protein kinase superfamily protein (.1) Potri.005G146000 [exp] 561 / 0 AT2G23070 625 / 0.0 Protein kinase superfamily protein (.1) Potri.002G003400 [exp] 143 / 6e-40 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G155000 [exp] 141 / 5e-38 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.005G257500 [exp] 137 / 8e-38 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.004G133500 [exp] 136 / 8e-38 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.006G113200 [exp] 135 / 5e-37 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.016G142800 [exp] 132 / 5e-36 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019288 pacid=23141362 polypeptide=Lus10019288 locus=Lus10019288.g ID=Lus10019288.BGIv1.0 annot-version=v1.0 ATGTCCAAGGCTAAGGTTTACACCGACGTTAACGTCATCCGCCCCAAGGATTACTGGGATTACGAGTCTCTTACTGTTCAGTGGGGGGATCAAGATGATT ATGAGGTTGTACGAAAAGTTGGAAGGGGCAAGTACAGTGAGGTCTTTGAAGGGATTAATGTGAATACGAATGAAAAATGTGTAATCAAGATCCTAAAGCC TGTTAAGAAGAAGAAGATAAAGAGGGAGATAAAGATACTTCAGAACCTCTGCGGTGGCCCAAATATAATCAAGCTTCATGATATTGTCAGAGATCAGCAC TCGAAAACTCCTAGCTTGATATTCGAATACGTGAATAGTACAGACTTCAAAGTCCTGTATCCGACTTTGACTGATTATGATATTCGTTACTACATATACG AACTTCTCAAGGCTTTGGATTACTGCCATTCGCAAGGAATAATGCACAGAGATGTCAAGCCGCACAATGTCATGATTGATCATGAATTGCGTAAACTTCG ATTGATTGACTGGGGTCTTGCCGAATTTTACCATCCTGCCAAGGAATACAATGTTAGGGTGGCCTCCAGATATTTCAAGGGTCCTGAGCTCTTAGTTGAT CTCCAGGACTATGACTATTCTTTGGACATGTGGAGCCTTGGATGCATGTTTGCTGGAATGATCTTCAGGAAGGAACCATTCTTTTATGGTCATGACAACC ATGACCAACTTGTTAAAATTGCAAAGGTACTCGGAACTGATGAGCTGAATGCATATCTAAACAAGTACCATCTAGAGCTTGATCCTCAACTGGATGCACT TGTCGGAAGGCACAGTAGGAAGCCATGGTCCAAGTTTGTAAATGCAGATAATCAGCACCTTGTTTCTCCAGAGGCTATTGACTTCCTTGACAAGCTCCTC CGATACGACCATCAGGACCGTTTGACCGCAAAAGAAGCAATGGCACACCCGTATTTCGCTCAAGTGAGGGCTGCTGAAAGTTGCAGAATGCGGACGCAAT AG
AA sequence Show only first row Show all	>Lus10019288 pacid=23141362 polypeptide=Lus10019288 locus=Lus10019288.g ID=Lus10019288.BGIv1.0 annot-version=v1.0 MSKAKVYTDVNVIRPKDYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIIKLHDIVRDQH SKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPAKEYNVRVASRYFKGPELLVD LQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFVNADNQHLVSPEAIDFLDKLL RYDHQDRLTAKEAMAHPYFAQVRAAESCRMRTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	2.8	0.9305
AT3G14830			unknown protein		Lus10005552 [exp]	5.5	0.9102
AT2G24550			unknown protein		Lus10020142 [exp]	6.8	0.9205
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10023299 [exp]	9.8	0.9164
AT3G14830			unknown protein		Lus10041938 [exp]	10.1	0.9188
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	12.0	0.9058
AT3G48860			unknown protein		Lus10032546 [exp]	12.5	0.8689
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	13.7	0.8841
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	14.4	0.9029
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	15.3	0.8597

Compare expression of checked genes

Lus10019288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.