Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37510 819 / 0 Ribonuclease III family protein (.1) AT2G48121 137 / 4e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011533 [exp] 1036 / 0 AT4G37510 860 / 0.0 Ribonuclease III family protein (.1) Lus10019587 [exp] 42 / 0.0009 AT5G20320 556 / 0.0 dicer-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053000 [exp] 861 / 0 AT4G37510 831 / 0.0 Ribonuclease III family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain
Representative CDS sequence Show only first row Show all	>Lus10019289 pacid=23141297 polypeptide=Lus10019289 locus=Lus10019289.g ID=Lus10019289.BGIv1.0 annot-version=v1.0 ATGGAACTCTCCTCTTCCTTCTCATCCGCCATCAAACCATCAGAGGTCACCTTCTCCCGCCATTCCCTCTGCCAATTCCCACTCCAATTCAACATCCCTC GCCGGAATCAGAAACCCACCCTCCGTATCTCAGCCGTCGCCACCGACGGCCCCCCAACAAAACCCCTCCCGCACAACAGCCCACAGAGACTCCTCAAGGA GCTAGAAGAGCGCAAAAGAACAACTTCCCCCAAGAAAAAACTCCCTCCCAAGCGATTCATCCTCAAGCCACCATTAGACGACAAAAAGCTCGCCGAACGG TTCCTCAACAGCCCCCAGCTCTCCCTCAAGCAATTCCCTTTACTCAGCTCCTGCCTCCCTTCTTCCCGCCTCAACAATGCCGACAGGACCTGGATGGACG AGTTCCTCCTGGAAGCCAAACAGGCTCTGGGTTATTCTCTGGAGCCTTCCGAATTGTTAGGAGATGATAATCCGGCGAAGCAATTCGATACTCTGTTGTA TTTAGCTTTCCAGCATCCGAGCTGTGACAGGACTAAGGCGAAGCATGTTAGGTCGGGGCATTCGAGGCTTTGCTTCTTGGGGCAGTATGTGCTTGAATTG GCTATGGCGGAGTTTTTGCTTCAGAGGTTTCCTAGGGAGTCTCCTGGCCCGATGAGGGAGAGGGTTTATGGGTTGATTGGGAAGAGGAATATGAGTAAGT GGATCAAAGCTGCTAGCTTGCATAACTTGGTTTTCCCCTTTGATGATATTGATAAGCTCAAGAGGGACGAAAAGGAGCCTCCTGTCAAATCGGTGTTCTG GGCATTGTTCGGCGCAATCTACCTCTGTTTCGGCATGCCTGAGGTGTACCGTGTCCTCTTCGAAGTATTCGGGATGGATCTCGAAGCAGAGGATTGCCAA CCGAAGTTAAGAAGACAACTCGAGGACGTTGATTATGTATCGGTTGAATTCGAAGGCAACAAGCTTACTTGGCAAGATGTTGCTGGTTACAAGCCCCCTC AAGACGCGCTATTTGCACATCCGAGGTTGTTCAGGGCGTGTGTTCCGCCAGGTATGCACAGGTTCAGAGGGAACTTGTGGGATTATGAAAGCCGGCCTCA CGTTATGCGAACGCTCGGATATCCTTTGAAGATGGAGGATAGAATTCCGGATATTACCGAAGCAAGGAACATCGAACTTGGGCTTGGATTGCAGCTTTGC TTCTTGCATCCGTCAAAGTACAAGTTTGAGCACCCTCGATTCTGCTACGAACGGTTGGAGTATGTCGGCCAAAAGATTCAGGACATAGTGATGGCGGAGA GGCTGCTGATGAAGCACCTGGACGCGCCGGGGAGGTTCCTGGCGGAGAGGCACCGCAGGACTCTCATGAACAAGTTCTGCGGGAAGTACTTGAGGGAGAA ACGGCTGCACCAGTACATGGTGTACGCGGAACAGGTTCGAGACCGGTACGAGCTCAACCGTAGGATGAAGAACCCGACCACTACCTCCGTCCAGCAAGCC ATCCACGGACTTTCCTATGCCGTGTATGGGAAGCCGGACGTTCGCCGCCTCATGTTCGAAGTCTTTGATTTCGAGCAAACCCAACCCAAGCCTGTGGGAT GA
AA sequence Show only first row Show all	>Lus10019289 pacid=23141297 polypeptide=Lus10019289 locus=Lus10019289.g ID=Lus10019289.BGIv1.0 annot-version=v1.0 MELSSSFSSAIKPSEVTFSRHSLCQFPLQFNIPRRNQKPTLRISAVATDGPPTKPLPHNSPQRLLKELEERKRTTSPKKKLPPKRFILKPPLDDKKLAER FLNSPQLSLKQFPLLSSCLPSSRLNNADRTWMDEFLLEAKQALGYSLEPSELLGDDNPAKQFDTLLYLAFQHPSCDRTKAKHVRSGHSRLCFLGQYVLEL AMAEFLLQRFPRESPGPMRERVYGLIGKRNMSKWIKAASLHNLVFPFDDIDKLKRDEKEPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDLEAEDCQ PKLRRQLEDVDYVSVEFEGNKLTWQDVAGYKPPQDALFAHPRLFRACVPPGMHRFRGNLWDYESRPHVMRTLGYPLKMEDRIPDITEARNIELGLGLQLC FLHPSKYKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGRFLAERHRRTLMNKFCGKYLREKRLHQYMVYAEQVRDRYELNRRMKNPTTTSVQQA IHGLSYAVYGKPDVRRLMFEVFDFEQTQPKPVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	0	1
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	2.2	0.9347
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	3.2	0.9448
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	3.5	0.9342
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	4.5	0.9356
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	4.9	0.9291
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	5.5	0.9366
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	5.8	0.9378
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	6.0	0.9246
AT2G29180			unknown protein		Lus10016512 [exp]	8.4	0.9215
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018729 [exp]	8.6	0.9039

Compare expression of checked genes

Lus10019289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.