Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67385 401 / 9e-135 Phototropic-responsive NPH3 family protein (.1) AT3G49970 293 / 9e-94 Phototropic-responsive NPH3 family protein (.1) AT2G30520 231 / 3e-69 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48800 230 / 9e-69 Phototropic-responsive NPH3 family protein (.1) AT2G47860 223 / 5e-66 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT1G03010 222 / 1e-65 Phototropic-responsive NPH3 family protein (.1) AT3G08570 201 / 7e-58 Phototropic-responsive NPH3 family protein (.1) AT5G64330 178 / 9e-50 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G03250 177 / 3e-49 Phototropic-responsive NPH3 family protein (.1) AT5G67440 174 / 6e-48 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011532 [exp] 776 / 0 AT5G67385 427 / 2e-144 Phototropic-responsive NPH3 family protein (.1) Lus10014858 [exp] 580 / 0 AT5G67385 489 / 2e-168 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 376 / 2e-125 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10040484 [exp] 243 / 1e-74 AT5G64330 440 / 5e-150 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10011290 [exp] 238 / 1e-72 AT5G64330 438 / 3e-149 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10025928 [exp] 238 / 9e-72 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10029102 [exp] 238 / 9e-72 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10013057 [exp] 236 / 5e-71 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10038169 [exp] 236 / 9e-69 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053200 [exp] 433 / 3e-147 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 238 / 1e-71 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 233 / 2e-69 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 228 / 6e-68 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 228 / 1e-67 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.013G159000 [exp] 226 / 1e-67 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.019G131600 [exp] 223 / 2e-66 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G112600 [exp] 187 / 3e-52 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 183 / 6e-51 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G090400 [exp] 179 / 9e-50 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10019290 pacid=23141370 polypeptide=Lus10019290 locus=Lus10019290.g ID=Lus10019290.BGIv1.0 annot-version=v1.0 ATGGTGGAAAGAGCAGCAGCTGTTCCTGTCAATAACATGTCAGAGAAGAAGGAGCTTCTTTCCTCTGCAATGAAGAGAACAGGAGAATGGATTATCTCCC AGGAAATCTCCAGTGATGTTACAGTTCATGTTGGCGGAGCATCTTTTTCATTGCACAAGTTTCTCTTGGTGTCAAAGTCAGGCTACATAAGAAAGCTAGT ATCCGAAACCAGAGATGATGACGTCACTGAGGTTAGAATACCTGAAATTCCAGGAGGGTGGGAGGCATTCGAACTTGCTGCAAAGTTCTGCTACGGGATC AACTTTGAGATTGGGACGGAGAACATTGCAGTGCTTCGATGCGCGGCGGAGTATCTCGAGATGACAGAAGAGTATTCTGTTGGAAACCTGGTATCAAGAA CAGAAGCCTACCTTAACGAAGTGACTCTAAAGAGCCTGGCCAGTGCAGTTTCTGTGCTACACCGTTCGGAAAGTCTAGGCGCCATTGCTGAGAAAGTGAA GTTAGTGAACAGATGCATAGATTCCATAGCAGTTATAACCTGCAAGGAAAGCAGCCAGTTTTCTATGTCAGGAAGCTTTGATGGTACCGTTGATTGGTGG GCTGAGGATTTAACTGTTCTGAGAATTGATGTGTTTCAAAGGGTTCTGATTGCAATGGTATCTAGAGGATTTAAGCAGTATGCACTTGGTCCTGTGCTTA TGCTCTATGCAAAGAAGTCCCTCCGAGGTCTGGACACATTTGGCAATAAGGGGAGGAAAAAGATCGAGCCGCAACAAGAGCACGAGAAGAGGGTCGTGTT AGAAACTATAGTCAGCCTTCTACCGAAGGAGAAGAATGCATTGTCTGCTCATCCTTCCTTGAGTGACATGGAGAGAAAGAAAGTGTGCAGCGTGATGGAC TGCCAGAAACTATCTCGCGAAGCCTGTGCGCACGCTGCGCAGAACGAAAGGCTCCCAGTCCAGACGGTGGTTCAAGTCCTTTACTACGAGCAGCAACGTC TACGAGACGCCATCAACGTTGACCATCCCACAAGCACTCCCTCCAGGTCTCCATTGCCATTCCACGCCACAGACATCCATCCTGTTCCTGACGAGCTATC AGTCTTAAAAAGAGAGAACCAAGACCTGAAGTTCGAACTCGTCAAGATGAAAATGAAGCTCAAGGAAATGGAGCTCAAGTTCAGCAGTGCATCTAGCAGC ACTGCAAGATCCACAGTTGGAAGTCCAATGGGAATCAGCAACTCTTCCCCATCTACTGCTGATAAGCCTCCTCTGCCTCCTAAGAAGCCATCATTCATCA ACTCTGTATCGAAGAAGCTCGGAAAGCTTTCGCCTTTCTTGGGTGTCTTACCGTCTAAGCCTCGAACCAAACCGCCTAAAGATAGGCGCCATTCCATATC CTGA
AA sequence Show only first row Show all	>Lus10019290 pacid=23141370 polypeptide=Lus10019290 locus=Lus10019290.g ID=Lus10019290.BGIv1.0 annot-version=v1.0 MVERAAAVPVNNMSEKKELLSSAMKRTGEWIISQEISSDVTVHVGGASFSLHKFLLVSKSGYIRKLVSETRDDDVTEVRIPEIPGGWEAFELAAKFCYGI NFEIGTENIAVLRCAAEYLEMTEEYSVGNLVSRTEAYLNEVTLKSLASAVSVLHRSESLGAIAEKVKLVNRCIDSIAVITCKESSQFSMSGSFDGTVDWW AEDLTVLRIDVFQRVLIAMVSRGFKQYALGPVLMLYAKKSLRGLDTFGNKGRKKIEPQQEHEKRVVLETIVSLLPKEKNALSAHPSLSDMERKKVCSVMD CQKLSREACAHAAQNERLPVQTVVQVLYYEQQRLRDAINVDHPTSTPSRSPLPFHATDIHPVPDELSVLKRENQDLKFELVKMKMKLKEMELKFSSASSS TARSTVGSPMGISNSSPSTADKPPLPPKKPSFINSVSKKLGKLSPFLGVLPSKPRTKPPKDRRHSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10019290 [exp]	0	1
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	1.4	0.9640
					Lus10025623 [exp]	5.7	0.9279
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011532 [exp]	7.6	0.9080
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	8.8	0.9410
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	9.2	0.9361
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001741 [exp]	9.5	0.9284
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	9.7	0.9433
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10001115 [exp]	10.1	0.8953
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	10.6	0.9357
AT5G02160			unknown protein		Lus10024373 [exp]	11.7	0.9271

Compare expression of checked genes

Lus10019290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.