Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67390 92 / 3e-23 unknown protein AT1G69360 51 / 2e-07 Plant protein of unknown function (DUF863) (.1) AT1G26620 50 / 3e-07 Plant protein of unknown function (DUF863) (.1) AT1G13940 48 / 1e-06 Plant protein of unknown function (DUF863) (.1) AT5G57340 44 / 2e-05 unknown protein AT5G07790 43 / 8e-05 unknown protein AT5G61300 41 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011531 [exp] 247 / 5e-84 AT5G67390 97 / 3e-25 unknown protein Lus10011080 [exp] 128 / 5e-37 AT5G67390 91 / 7e-23 unknown protein Lus10037122 [exp] 49 / 1e-06 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10036807 [exp] 48 / 2e-06 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10014857 [exp] 45 / 3e-06 ND 39 / 3e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053300 [exp] 92 / 5e-23 AT5G67390 100 / 3e-26 unknown protein Potri.005G145800 [exp] 88 / 2e-21 AT5G67390 87 / 1e-21 unknown protein Potri.004G125900 [exp] 49 / 9e-07 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 47 / 6e-06 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.008G092800 [exp] 46 / 8e-06 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 45 / 2e-05 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.018G090000 [exp] 44 / 3e-05 AT5G57340 72 / 8e-15 unknown protein Potri.003G112000 [exp] 43 / 9e-05 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.006G262600 [exp] 42 / 0.0002 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1) Potri.018G020800 [exp] 40 / 0.0007 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019291 pacid=23141299 polypeptide=Lus10019291 locus=Lus10019291.g ID=Lus10019291.BGIv1.0 annot-version=v1.0 ATGGAGAGAGTTCTCAAGCCTTATGACAAGGAATGCATGAGGCTAGCAATGCTAAAGCATGAAGAAACATTCAAAGAACAGGTATATGAACTCCACAGGC TATACAGGATTCAGAAGCTACTGATGAGAAATCACACTGACAAAACCAACAAAAGCAGGAACGCTACTACTAATACTAACTACAGTACTCATCAGAAGAA CCACCAAGAAACTTGGAACTCTGGCTTCAGTTTCATCCCCAATAACACTACTACTACTACTACTACTACTACCACCACTAACCCTGAGTTCGAAGAGTCG AACGGGGAGCTGATCGAGGAGTGCGATATCGAGCTTACATTAGGGCCAACAAGTTATGCCAAGAAGAAGAGGAGGAATAACAACAACAACAAGGTTCCTG ATGAGACACCACCTTTGACATCAGAGTCAGCAGGTCCAAGCAGCTTCTCTTCATCGTCAACCGGGTCGAGTCAAATCAACAGGACCGAATCCGGAATGAT TAAAAACCAGAATGGAAGTAGTATTAGCAATGTTGATCATAGATTAGAACAACAGCAGCAGCAGCAGGCTCCCTGGTTTCTCCAGGTTTTGAGCCTTAAC ATGACTTGA
AA sequence Show only first row Show all	>Lus10019291 pacid=23141299 polypeptide=Lus10019291 locus=Lus10019291.g ID=Lus10019291.BGIv1.0 annot-version=v1.0 MERVLKPYDKECMRLAMLKHEETFKEQVYELHRLYRIQKLLMRNHTDKTNKSRNATTNTNYSTHQKNHQETWNSGFSFIPNNTTTTTTTTTTTNPEFEES NGELIEECDIELTLGPTSYAKKKRRNNNNNKVPDETPPLTSESAGPSSFSSSSTGSSQINRTESGMIKNQNGSSISNVDHRLEQQQQQQAPWFLQVLSLN MT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67390			unknown protein		Lus10019291 [exp]	0	1
AT2G28605			Photosystem II reaction center...		Lus10029532 [exp]	8.0	0.8324
AT5G54980			Uncharacterised protein family...		Lus10034604 [exp]	8.4	0.8295
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	14.2	0.8578
AT5G40500			unknown protein		Lus10022273 [exp]	21.0	0.8114
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10016517 [exp]	22.7	0.8474
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10043094 [exp]	26.4	0.8446
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10027871 [exp]	29.9	0.8292
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	33.3	0.8316
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10037306 [exp]	44.2	0.7691
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10025007 [exp]	48.9	0.8267

Compare expression of checked genes

Lus10019291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.