Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49940 251 / 6e-84 AS2 LBD38 LOB domain-containing protein 38 (.1) AT5G67420 239 / 6e-79 AS2 ASL39, LBD37 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) AT4G37540 232 / 2e-76 AS2 LBD39 LOB domain-containing protein 39 (.1) AT1G67100 172 / 4e-53 AS2 LBD40 LOB domain-containing protein 40 (.1) AT3G02550 169 / 2e-51 AS2 LBD41 LOB domain-containing protein 41 (.1) AT1G68510 160 / 1e-48 AS2 LBD42 LOB domain-containing protein 42 (.1) AT1G07900 58 / 4e-10 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 57 / 2e-09 AS2 LBD11 LOB domain-containing protein 11 (.1) AT3G26660 48 / 4e-07 AS2 LBD24 LOB domain-containing protein 24 (.1) AT3G26620 48 / 5e-07 AS2 LBD23 LOB domain-containing protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011530 [exp] 459 / 2e-165 AT3G49940 260 / 2e-87 LOB domain-containing protein 38 (.1) Lus10018697 [exp] 191 / 8e-61 AT5G67420 190 / 9e-61 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Lus10007758 [exp] 189 / 1e-59 AT3G49940 191 / 1e-60 LOB domain-containing protein 38 (.1) Lus10028470 [exp] 169 / 1e-53 AT1G67100 205 / 2e-68 LOB domain-containing protein 40 (.1) Lus10011645 [exp] 57 / 2e-09 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10040313 [exp] 56 / 2e-09 AT5G66870 133 / 5e-40 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10018993 [exp] 56 / 2e-09 AT3G26660 134 / 2e-41 LOB domain-containing protein 24 (.1) Lus10036130 [exp] 57 / 3e-09 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1) Lus10033843 [exp] 55 / 4e-09 AT1G07900 143 / 8e-44 LOB domain-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053600 [exp] 287 / 5e-98 AT3G49940 263 / 3e-89 LOB domain-containing protein 38 (.1) Potri.005G145500 [exp] 275 / 2e-93 AT5G67420 244 / 2e-81 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Potri.002G119400 [exp] 202 / 3e-65 AT3G49940 198 / 5e-64 LOB domain-containing protein 38 (.1) Potri.014G017400 [exp] 199 / 8e-64 AT4G37540 196 / 4e-63 LOB domain-containing protein 39 (.1) Potri.009G089600 [exp] 191 / 5e-61 AT3G49940 195 / 7e-63 LOB domain-containing protein 38 (.1) Potri.001G295700 [exp] 184 / 3e-58 AT3G49940 186 / 2e-59 LOB domain-containing protein 38 (.1) Potri.004G100100 [exp] 177 / 4e-54 AT3G02550 277 / 2e-93 LOB domain-containing protein 41 (.1) Potri.017G114500 [exp] 171 / 6e-52 AT3G02550 291 / 5e-99 LOB domain-containing protein 41 (.1) Potri.008G120600 [exp] 166 / 1e-50 AT1G68510 228 / 3e-75 LOB domain-containing protein 42 (.1) Potri.010G125000 [exp] 162 / 4e-49 AT1G68510 220 / 2e-72 LOB domain-containing protein 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10019292 pacid=23141326 polypeptide=Lus10019292 locus=Lus10019292.g ID=Lus10019292.BGIv1.0 annot-version=v1.0 ATGAGCTGTAACGGTTGCAGAGTTCTCCGGAAAGGATGCAGCGAGACCTGCATCCTCCGTCCTTGCCTCCAGTGGATCGACAGCCCTGAATCTCAAGGCC ACGCCACCGTCTTCGTCGCCAAATTCTTCGGCCGAGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCCGATTCCCAACGCCCTGCTTTGTTTCAATCGTT GCTTTTCGAAGCCTGCGGGAGGACAGTGAACCCGGTGAACGGAGCGGTGGGGCTGCTGTGGACGGGGAACTGGCACGTGTGCCAAACGGCGGTGGAGACA GTGCTACGTGGGGGGAGTTTGCGAGCTATGCCGGAGCTGCTTGTAGCTGGATCTGGATCTGCCGATCAGGCCTCCGATGAAACGTCGGAGGTTGGAGTTG GTTGCTCGGATATGTGGAAGCTCGGCGGCGGTGGAGGAGGTGATAATAAGGATCTGATTAGTCTGAGTAGTAATAATCATTGCAGGTTCTCTAGCTCCAG ATCTAAGGTTTCGCCGAAGCGGAAGCGAGCTGAGCAACCGCCGATGATGATGAAGCTGATGACGAGGACGAGTGACCTAGATCTGCGGCTGACTCCGAGC ATCTCTCCCAAGGCGGTTCCGCTGTACAAACCGGAGATCCGGCGACATGGGTCGCCGTCGATGAACTCCGAAGAGTCCGGGACTACTACTTGTTTGGATA GCAGCGCCGCTCCTAGAGTTTGGCGAAACGGAAACCGAGACCATCAGTACGGCGGCCTCGTCGGAGGAGGAGGTGAGGAGAAAAAGTTGCTGAACTTGTT TGTTTGA
AA sequence Show only first row Show all	>Lus10019292 pacid=23141326 polypeptide=Lus10019292 locus=Lus10019292.g ID=Lus10019292.BGIv1.0 annot-version=v1.0 MSCNGCRVLRKGCSETCILRPCLQWIDSPESQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQTAVET VLRGGSLRAMPELLVAGSGSADQASDETSEVGVGCSDMWKLGGGGGGDNKDLISLSSNNHCRFSSSRSKVSPKRKRAEQPPMMMKLMTRTSDLDLRLTPS ISPKAVPLYKPEIRRHGSPSMNSEESGTTTCLDSSAAPRVWRNGNRDHQYGGLVGGGGEEKKLLNLFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10019292 [exp]	0	1
AT1G68490			unknown protein		Lus10038934 [exp]	4.1	0.8715
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10005769 [exp]	16.7	0.8527
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10023299 [exp]	19.1	0.8690
AT2G39950			unknown protein		Lus10040223 [exp]	24.2	0.8626
AT2G24550			unknown protein		Lus10020142 [exp]	32.8	0.8575
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10010907 [exp]	38.1	0.8335
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	44.4	0.8479
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10035538 [exp]	48.5	0.8525
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	52.4	0.8215
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019880 [exp]	67.3	0.8208

Compare expression of checked genes

Lus10019292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.