Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011527 [exp] 597 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053900 [exp] 508 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10343 [flax] [poplar] Q_salvage Potential Queuosine, Q, salvage protein family
Representative CDS sequence Show only first row Show all	>Lus10019295 pacid=23141397 polypeptide=Lus10019295 locus=Lus10019295.g ID=Lus10019295.BGIv1.0 annot-version=v1.0 ATGGCGTTGGCTGGCAGCATGGCAATGGACGAAGTTAGGGCGAGCGCCGCCTGGGTTGCTGCTCGGTCGACCCACGTCACCGTTAACCCTGAAGCGATTG AGAAGGTAGTGGATAACATTCATGACAAAATCCCGAAGATAGAATGGGATTTCGAAGGGATTCACTATTTCGACGGCGGCCCTCTCACCGTCCAGTACCT CTTTGTTCTCGACACCCTCAATTTCTGCTTCTGGCCTGATGATGAATTGAACTATGGTGATCTGGCTTCTGGATTAAAGGCAGCTGTAGAGAAGGACAAA TCCGTATTTGATGCGGATAGACTGCAAAAGTACACTGGTCCCGAGTTGCGCAAATTACTGAACTGGCCGCGACCACTTCCCTTGGAGGATGAACGTGTTC GTTTGCTGCACGAGGTTGGTTTCGAGCTGGAGCGAAGTTTTGGTGGCAAGGCTTCGAATATCGTGATGTCTTGCAAGAAGTCGGCTTCAAAGCTGGTTGC AACTATCACCAGTCACTTCCCTGGCTTCAGAGACCATTCAGTGTACAAAGGCCACCAAGTGTTCTTCTACAAAAGAGCTCAGATCTTCGCAGCTGATCTC TACGGTGCATTCAAGGGGCAAGGATATGGAGACTTCAACGACATTACCTCGATAACTATTTTCGCTGACTACATCGTTCCTGCTGTTCTCCGGGAGCTCG GTGTGCTGACATACCATTCTAACCTGGCCAGTGTGGTCGACTCTCACAGTGAGATCACAGCTGGCAGCCAGGAGGAAGTCGAGTTACGAGCCTGCTCCAT ATATGCCGTGGAGAAGATGAGAGACTTGGTTCATCTGAAATCGGGAAAACCGGTTCTGAGTGTGGAGTTGGATCTTTGGCTGTGGGCTTATGGTGTTCAA CAACCTTCTCTGCAATACCACAGAACTCTCTCAATATACTACTGA
AA sequence Show only first row Show all	>Lus10019295 pacid=23141397 polypeptide=Lus10019295 locus=Lus10019295.g ID=Lus10019295.BGIv1.0 annot-version=v1.0 MALAGSMAMDEVRASAAWVAARSTHVTVNPEAIEKVVDNIHDKIPKIEWDFEGIHYFDGGPLTVQYLFVLDTLNFCFWPDDELNYGDLASGLKAAVEKDK SVFDADRLQKYTGPELRKLLNWPRPLPLEDERVRLLHEVGFELERSFGGKASNIVMSCKKSASKLVATITSHFPGFRDHSVYKGHQVFFYKRAQIFAADL YGAFKGQGYGDFNDITSITIFADYIVPAVLRELGVLTYHSNLASVVDSHSEITAGSQEEVELRACSIYAVEKMRDLVHLKSGKPVLSVELDLWLWAYGVQ QPSLQYHRTLSIYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019295 [exp]	0	1
AT5G10960			Polynucleotidyl transferase, r...		Lus10029713 [exp]	1.4	0.7002
AT5G27670		HTA7	histone H2A 7 (.1)		Lus10029899 [exp]	4.9	0.6396
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10022422 [exp]	13.3	0.6124
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	13.4	0.6268
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	19.1	0.6583
AT2G37960			unknown protein		Lus10027749 [exp]	43.8	0.6160
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	48.6	0.6060
AT5G10960			Polynucleotidyl transferase, r...		Lus10029710 [exp]	54.4	0.6066
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	62.9	0.5348
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	72.6	0.6041

Compare expression of checked genes

Lus10019295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.