Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23070 618 / 0 Protein kinase superfamily protein (.1) AT5G67380 561 / 0 ATCKA1, CKA1 casein kinase alpha 1 (.1.2) AT3G50000 560 / 0 ATCKA2, CKA2 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) AT2G23080 535 / 0 CKA3 casein kinase II, alpha chain 3, Protein kinase superfamily protein (.1.2) AT2G38620 137 / 4e-37 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT2G30980 136 / 7e-36 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT3G54180 134 / 1e-35 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G20930 133 / 1e-35 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 132 / 3e-35 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G48750 132 / 3e-35 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011526 [exp] 734 / 0 AT2G23070 632 / 0.0 Protein kinase superfamily protein (.1) Lus10011534 [exp] 556 / 0 AT3G50000 620 / 0.0 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) Lus10019288 [exp] 555 / 0 AT5G67380 623 / 0.0 casein kinase alpha 1 (.1.2) Lus10032849 [exp] 527 / 0 AT5G67380 563 / 0.0 casein kinase alpha 1 (.1.2) Lus10013088 [exp] 137 / 3e-36 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10040593 [exp] 134 / 1e-35 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 132 / 3e-35 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10018850 [exp] 133 / 4e-34 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10031440 [exp] 131 / 5e-34 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054100 [exp] 633 / 0 AT2G23070 638 / 0.0 Protein kinase superfamily protein (.1) Potri.005G146000 [exp] 620 / 0 AT2G23070 625 / 0.0 Protein kinase superfamily protein (.1) Potri.007G052800 [exp] 569 / 0 AT5G67380 632 / 0.0 casein kinase alpha 1 (.1.2) Potri.005G145900 [exp] 561 / 0 AT5G67380 620 / 0.0 casein kinase alpha 1 (.1.2) Potri.002G003400 [exp] 138 / 3e-37 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G155000 [exp] 139 / 2e-36 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.005G257500 [exp] 134 / 7e-36 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.014G075100 [exp] 134 / 2e-34 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.014G115600 [exp] 132 / 2e-34 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.016G142800 [exp] 130 / 2e-34 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019296 pacid=23141415 polypeptide=Lus10019296 locus=Lus10019296.g ID=Lus10019296.BGIv1.0 annot-version=v1.0 ATGGCCATAGGGCCTCTCCTTCTCCAACTTCTACACCAAACCCATCACCAATTCGCTCCCCTCCGCCGTATTTCCGCCGCCTCCTCCTCATCCCTGCGCT GTTTATCAACCTCCGTCTCTTCCTCCGCCGCCGCCTTCTCTCGTCATCAGCACAACTGCAGCACCCCTCAGAAGAAGCAGAATCCGAACCCTAGACAGCG TCCTCCGGCGTCGCTCTACTTGAATCGGTGGAGGTCATTGACTCCCAACGTGATGGCGCAGAAGATCGGGAAATCGGTCCGCCGCCCTGGCGCTCCGTCC AAGGCTAGGGTTTATCCTGATGTCAACGTTACCCGGCCTAAGGAGTATTGGGACTACGAGACTCTCACCGTTCAATGGGGGGAACAAGATAATTATGAGG TGGTGAGGAAAGTTGGCAGGGGGAAATACAGTGAGGTCTTCGAAGGTTTTCATGTCACCGACAATGAGAAATGCGTCATTAAGATTCTGAAGCCTGTGAA GAAGAAGAAGATTAAGAGGGAGATCAAAATTCTGCAGAATCTGTGTGGAGGGCCTAACATAGTGAAGTTGCTAGATATTGTTAGAGATCAGCAATCAAAG ACGCCGAGTCTTATATTTGAATACGTGAATAACACCGACTTCAAAGTGCTGTATCCAACGCTTCAGGACTATGATATCAGATATTACCTCTATGAACTTC TAAAGGCACTTGATTATTGCCATTCACAAGGTATCATGCATCGTGATGTCAAACCCCACAATGTTATGATTGATCACGAGCAGAGGAAACTTCGTCTCAT AGACTGGGGCCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTGGCTTCAAGGTACTTCAAAGGCCCTGAGCTCCTTGTTGATTTACAA GACTATGACTACTCATTGGATCTCTGGAGTCTTGGCTGTATGTTTGCCGGAATGATATTCCGCAAGGAGCCATTCTTCTATGGCCATGATAATTACGATC AATTGGTCAAAATAGCCAAGGTCCTCGGAACAGAAGAGCTGAATGCATACTTGAGCAAGTACCGCATCGAATTGGACCCGCACCTTGCAGCCCTTGTTGG AAGGCATGGCCGGAAACCGTGGACTAGATTCATCAATCCGGAGAACCACCATTTGGCAAATCCTGAGGCAATCGACTTCGTGGACAAATTGTTGCGATAC GATCACCAAGAGAGGCCAACTGCAAAAGAAGCTATGGCACATCCTTATTTCTACCCGATTCGAAATGCAGAGAGCAGCAGGAGTCGAGCTTAG
AA sequence Show only first row Show all	>Lus10019296 pacid=23141415 polypeptide=Lus10019296 locus=Lus10019296.g ID=Lus10019296.BGIv1.0 annot-version=v1.0 MAIGPLLLQLLHQTHHQFAPLRRISAASSSSLRCLSTSVSSSAAAFSRHQHNCSTPQKKQNPNPRQRPPASLYLNRWRSLTPNVMAQKIGKSVRRPGAPS KARVYPDVNVTRPKEYWDYETLTVQWGEQDNYEVVRKVGRGKYSEVFEGFHVTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSK TPSLIFEYVNNTDFKVLYPTLQDYDIRYYLYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQ DYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTEELNAYLSKYRIELDPHLAALVGRHGRKPWTRFINPENHHLANPEAIDFVDKLLRY DHQERPTAKEAMAHPYFYPIRNAESSRSRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	0	1
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	1.7	0.9333
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10032420 [exp]	2.8	0.9305
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	3.0	0.8968
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10027832 [exp]	5.3	0.9075
AT5G59410			Rab5-interacting family protei...		Lus10040798 [exp]	5.5	0.9230
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	6.7	0.9050
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	9.2	0.8900
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10004108 [exp]	12.5	0.8920
AT4G23740			Leucine-rich repeat protein ki...		Lus10039321 [exp]	13.7	0.8925
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	16.0	0.8977

Compare expression of checked genes

Lus10019296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.